Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060509.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_6656| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_58817| Best HMM Match : 7tm_1 (HMM E-Value=7e-21)                   28   6.1  
SB_10282| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_48878| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                28   8.1  
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   8.1  
SB_29046| Best HMM Match : Alpha_kinase (HMM E-Value=8.4e-13)          28   8.1  

>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = +1

Query: 178  AAKKQSTSHKE*IRELRKREQTALDKHTTTQLCKQKNSGVNIEEKHDQAIVNHEKNVGFD 357
            +  K+STS  + I E+ KR+  ALDK        +KN   NI +  D     HE     D
Sbjct: 3311 SVNKRSTSEHKDINEILKRQVPALDKKFDINYILRKNI-ANISKTFDLTRALHEYTRVLD 3369

Query: 358  SSIGDHEPR 384
            +   +H  R
Sbjct: 3370 TFNVNHVMR 3378


>SB_6656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +1

Query: 115 IIVERFRKYLKCAQKCRNNDIAAKKQSTSHKE*IRELRKRE-QTALDKHTTTQLCKQKNS 291
           I   + +K  +  Q  ++  + A  ++ +H+  I+E  +RE Q       T  + + ++ 
Sbjct: 5   IAATKIQKSAEPEQDKKDTPMFAADKTETHRHVIQEEHEREYQQGCLAAGTVNVWQFRDE 64

Query: 292 GVNIEEKHDQAIVNHEKNVGFDSSI 366
             N E+KHD  ++   K +  +  I
Sbjct: 65  TGNFEQKHDAELIKEAKRIEVEEEI 89


>SB_58817| Best HMM Match : 7tm_1 (HMM E-Value=7e-21)
          Length = 298

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 507 IDRNQIAPKRHGSCNGRSETANFTMISNQKLSKERLKILGNFL 635
           I+ +   P  H + NGR +T  F  +  +K +     ILG FL
Sbjct: 209 IEAHSATPANHQTHNGRRQTLAFNFLKYKKSTLTMCYILGIFL 251


>SB_10282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -1

Query: 364 LMSQILRSS---HGLQ*LDRVFLQCSLRYFSVYTTVWLCVYQERF 239
           L+ + L SS   H L+  DR+ L C L     Y+T + CV+  RF
Sbjct: 221 LLLEFLNSSSLLHELRSRDRLTLSCVLTRLLEYSTYFPCVFLTRF 265


>SB_48878| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 1213

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 250  DKHTTTQLCKQKNSGVNIEEKHDQAIVNH-EKNVGFDSSIGDHE 378
            D    T  C Q+ SG   E +H   IVNH ++ +    S  DHE
Sbjct: 912  DGEPITVYCDQEESGGGWEIRHVNQIVNHGKRQMPHKKSAIDHE 955


>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 3312

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +1

Query: 184  KKQSTSHKE*IRELRKREQTALDKHTTTQLCKQKNSGVNIEEKHDQAIVNHEKNVGFDSS 363
            K+ ++ HK+ I E+ KR+  ALDK        +KN   NI +  D     HE     D+ 
Sbjct: 1767 KRSASEHKD-INEILKRQVPALDKKFDINHILRKNI-ANISKTFDLTRALHEYTRVLDTF 1824

Query: 364  IGDHEPR 384
              +H  R
Sbjct: 1825 NVNHVMR 1831


>SB_29046| Best HMM Match : Alpha_kinase (HMM E-Value=8.4e-13)
          Length = 1054

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -3

Query: 443 LLSLLMAFRSALLYK*LVFGLGSWSPIDESNPTFFSWFTIA*SCFSSMFTPLFFCLHNC 267
           LLSL +   +   Y  L+  LG    +  ++P   ++F+   +   S++TP+FF  H+C
Sbjct: 462 LLSLCLRGMTVSDYTYLIQSLG----LLNAHPLLAAYFSAKEAAKLSVYTPMFFLRHSC 516


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,240,731
Number of Sequences: 59808
Number of extensions: 381855
Number of successful extensions: 1152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)