Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060509.seq
(685 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY028079-1|AAK21976.1| 282|Homo sapiens putative protein protein. 33 0.72
AY027807-1|AAK14796.1| 282|Homo sapiens unknown protein. 33 0.72
AL161645-3|CAH70048.1| 282|Homo sapiens novel protein protein. 33 0.72
BC034821-1|AAH34821.1| 315|Homo sapiens SYCE1 protein protein. 33 0.95
AK126160-1|BAC86466.1| 203|Homo sapiens protein ( Homo sapiens ... 31 3.8
U02619-1|AAA17985.1| 2109|Homo sapiens TFIIIC Box B-binding subu... 31 5.0
AC002303-1|AAB67637.1| 1857|Homo sapiens Transcription factor (T... 31 5.0
>AY028079-1|AAK21976.1| 282|Homo sapiens putative protein protein.
Length = 282
Score = 33.5 bits (73), Expect = 0.72
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +1
Query: 97 DLNKRVIIVERFRKYLKC--AQKCRNNDIAAKKQSTSHKE*IRELRKREQTALDKHTTTQ 270
DL + I E +K L +K +I +KKQ T + +++E A KHT Q
Sbjct: 37 DLGEARTICEALQKELDSLHGEKVHLKEILSKKQETLRILRLH-CQEKESEAHRKHTMLQ 95
Query: 271 LCKQKNSGVNI---EEKHDQAIVNHEKNVGFDSSIGDHE 378
CK++ S +N+ EEK+ Q + + +G H+
Sbjct: 96 ECKERISALNLQIEEEKNKQRQLRLAFEEQLEDLMGQHK 134
>AY027807-1|AAK14796.1| 282|Homo sapiens unknown protein.
Length = 282
Score = 33.5 bits (73), Expect = 0.72
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +1
Query: 97 DLNKRVIIVERFRKYLKC--AQKCRNNDIAAKKQSTSHKE*IRELRKREQTALDKHTTTQ 270
DL + I E +K L +K +I +KKQ T + +++E A KHT Q
Sbjct: 37 DLGEARTICEALQKELDSLHGEKVHLKEILSKKQETLRILRLH-CQEKESEAHRKHTMLQ 95
Query: 271 LCKQKNSGVNI---EEKHDQAIVNHEKNVGFDSSIGDHE 378
CK++ S +N+ EEK+ Q + + +G H+
Sbjct: 96 ECKERISALNLQIEEEKNKQRQLRLAFEEQLEDLMGQHK 134
>AL161645-3|CAH70048.1| 282|Homo sapiens novel protein protein.
Length = 282
Score = 33.5 bits (73), Expect = 0.72
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +1
Query: 97 DLNKRVIIVERFRKYLKC--AQKCRNNDIAAKKQSTSHKE*IRELRKREQTALDKHTTTQ 270
DL + I E +K L +K +I +KKQ T + +++E A KHT Q
Sbjct: 37 DLGEARTICEALQKELDSLHGEKVHLKEILSKKQETLRILRLH-CQEKESEAHRKHTMLQ 95
Query: 271 LCKQKNSGVNI---EEKHDQAIVNHEKNVGFDSSIGDHE 378
CK++ S +N+ EEK+ Q + + +G H+
Sbjct: 96 ECKERISALNLQIEEEKNKQRQLRLAFEEQLEDLMGQHK 134
>BC034821-1|AAH34821.1| 315|Homo sapiens SYCE1 protein protein.
Length = 315
Score = 33.1 bits (72), Expect = 0.95
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +1
Query: 97 DLNKRVIIVERFRKYLKC--AQKCRNNDIAAKKQSTSHKE*IRELRKREQTALDKHTTTQ 270
DL + I E +K L +K +I +KKQ T + +++E A KHT Q
Sbjct: 37 DLGEARTICEALQKELDSLHGEKVHLKEILSKKQETLRILRLH-CQEKESEAHRKHTMLQ 95
Query: 271 LCKQKNSGVNI---EEKHDQAIVNHEKNVGFDSSIGDHE 378
CK++ S +N+ EEK+ Q + + +G H+
Sbjct: 96 DCKERISALNLQIEEEKNKQRQLRLAFEEQLEDLMGQHK 134
>AK126160-1|BAC86466.1| 203|Homo sapiens protein ( Homo sapiens
cDNA FLJ44172 fis, clone THYMU2036085. ).
Length = 203
Score = 31.1 bits (67), Expect = 3.8
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = -2
Query: 348 YVLLMVYNSLIVFFFNVHSAIFLFTQLCGCVFIKSGLFSFPKFSNLLFMACTLFFGCDII 169
Y+ + VY S+ + +V ++FLF L C+F+ S S S LF+ TL FG +
Sbjct: 98 YLCVSVYFSV---YLSVLQSVFLFLALRQCLFLSSLSCSAMAISTALFL--TLIFGLCVS 152
Query: 168 ISTLLS 151
S LS
Sbjct: 153 PSHFLS 158
>U02619-1|AAA17985.1| 2109|Homo sapiens TFIIIC Box B-binding subunit
protein.
Length = 2109
Score = 30.7 bits (66), Expect = 5.0
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +1
Query: 223 LRKREQTALDKHTTTQLCKQKNSGVNIEEKHDQAIVNHE--KNVGFDSSIGDHEPRP--N 390
L+K +++A+DKH + C E D+ ++ + G DSS H R
Sbjct: 1074 LQKEQESAMDKHNLERKCAMLEYTTGSREVVDEGLIPGDGLGAAGLDSSFYGHLKRNWIW 1133
Query: 391 TSYLYSRADLKAINSDNKTCLSRQT 465
TSY+ ++A + ++N + QT
Sbjct: 1134 TSYIINQAKKENTAAENGLTVRLQT 1158
>AC002303-1|AAB67637.1| 1857|Homo sapiens Transcription factor
(TFIIIC) alpha chain, partial protein.
Length = 1857
Score = 30.7 bits (66), Expect = 5.0
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +1
Query: 223 LRKREQTALDKHTTTQLCKQKNSGVNIEEKHDQAIVNHE--KNVGFDSSIGDHEPRP--N 390
L+K +++A+DKH + C E D+ ++ + G DSS H R
Sbjct: 822 LQKEQESAMDKHNLERKCAMLEYTTGSREVVDEGLIPGDGLGAAGLDSSFYGHLKRNWIW 881
Query: 391 TSYLYSRADLKAINSDNKTCLSRQT 465
TSY+ ++A + ++N + QT
Sbjct: 882 TSYIINQAKKENTAAENGLTVRLQT 906
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,145,817
Number of Sequences: 237096
Number of extensions: 1751971
Number of successful extensions: 3920
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3911
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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