Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060509.seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45310.1 68418.m05562 expressed protein                             29   2.2  
At1g32840.1 68414.m04047 Ulp1 protease family protein similar to...    29   2.9  
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai...    29   3.8  
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ...    28   5.0  
At5g24170.1 68418.m02844 expressed protein                             27   8.8  
At3g51650.1 68416.m05664 expressed protein                             27   8.8  
At3g51640.1 68416.m05663 expressed protein                             27   8.8  
At1g10180.1 68414.m01148 expressed protein                             27   8.8  

>At5g45310.1 68418.m05562 expressed protein
          Length = 352

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 302 MFTPLFFCLHNCVVVCLSRAVCSRFLSSRIY--SLWLVLCFL 183
           M  P FFC++ C V CL  A+ + F+S+ +   ++W  L  L
Sbjct: 18  MTRPFFFCIYAC-VFCLRTALVTTFVSTDMVTSAIWFNLSML 58


>At1g32840.1 68414.m04047 Ulp1 protease family protein similar to
           At4g04010, At2g06430, At2g15140, At2g04980, At2g14130,
           At3g44500, At2g15190, At3g47260, At5g34900, At3g29210,
           At2g02210, At3g32900
          Length = 611

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
 Frame = +1

Query: 82  LFVSVDLNKRVIIVERFRKYLKCAQKCRNNDIAAKKQSTSHKE*IRELRKREQTALDKHT 261
           L +  DLNKRV ++ER    ++  +K        +++   H+E  R+L   E+  L++  
Sbjct: 150 LTILEDLNKRVELIERILD-IRMEEKNNQRSEEDEERKQEHEEVERQLEAEEEGGLER-- 206

Query: 262 TTQLCKQKNSGVNIEEKHDQAIVNHEKNVGFDSSI--GDHEPRPNTS 396
                K +N   + E+   +    +    G D +    D  P P +S
Sbjct: 207 -----KAENDNESFEDSIREPNTQYGSYPGDDENTQRDDKSPTPRSS 248


>At3g19840.1 68416.m02513 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           transcription factor CA150b [Mus musculus] GI:6329166;
           contains Pfam profiles PF01846: FF domain, PF00397: WW
           domain
          Length = 743

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
 Frame = +1

Query: 70  QNHSLFVSVDLNKRVIIVERFRKYLKCAQKCRNNDIAAKKQSTSHKE*IRELRKR-EQTA 246
           +N   + SV    R +    +   LK AQ+  ++++ A+ +    +E  RELRKR E+  
Sbjct: 528 RNEPRYRSVAHEDREVFYYEYIAELKAAQRGDDHEMKARDEEDKLRERERELRKRKEREV 587

Query: 247 LDKHTTTQLCKQKNSGVNIEEKHDQAIVNHEKNVGFDSSIGDHEPRPNTS 396
            +     Q  ++K +  + +    + I + E +      I + +P+   S
Sbjct: 588 QEVERVRQKIRRKEASSSYQALLVEKIRDPEASWTESKPILERDPQKRAS 637


>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
            DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
            [Arabidopsis thaliana]
          Length = 1576

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/108 (20%), Positives = 47/108 (43%)
 Frame = +1

Query: 154  QKCRNNDIAAKKQSTSHKE*IRELRKREQTALDKHTTTQLCKQKNSGVNIEEKHDQAIVN 333
            +K + +D+A + + T  K         +   + ++T + L  + N    +   ++    N
Sbjct: 1373 EKSKPSDLANENEQTEPKS----ANNLDLGNMKENTPSDLANE-NEQTELRLPNNSDYGN 1427

Query: 334  HEKNVGFDSSIGDHEPRPNTSYLYSRADLKAINSDNKTCLSRQTSDPG 477
             E+++  + + GD +P P T+ + +    K   S +K C S    D G
Sbjct: 1428 MEESLPLNLANGDEQPDPTTAPMEAAKQPKKKRSRSKKCKSVNNLDLG 1475


>At5g24170.1 68418.m02844 expressed protein 
          Length = 163

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 308 SSMFTPLFFCLHNCVVVCLSRA-VCSRFLSSRIYSLWLVLCFLAAI 174
           S MF P+ F   +  + C+  A +C+  + S+I ++  +LC + A+
Sbjct: 91  SMMFDPVRFLATSIYIGCVVVALICALLIHSKILTVLAILCEICAL 136


>At3g51650.1 68416.m05664 expressed protein
          Length = 826

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 127 RFRKYLKCAQKCRNNDIAAKKQSTSHKE*IRELRKREQ 240
           R R  +  A+KC    +AAK++ T   E  R+ R++E+
Sbjct: 292 RLRDEILEAEKCSKFSVAAKEKDTKEAEKKRQERRKER 329


>At3g51640.1 68416.m05663 expressed protein
          Length = 826

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 127 RFRKYLKCAQKCRNNDIAAKKQSTSHKE*IRELRKREQ 240
           R R  +  A+KC    +AAK++ T   E  R+ R++E+
Sbjct: 292 RLRDEILEAEKCSKLSVAAKEKDTKEAEKKRQERRKER 329


>At1g10180.1 68414.m01148 expressed protein
          Length = 769

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/66 (21%), Positives = 28/66 (42%)
 Frame = +1

Query: 235 EQTALDKHTTTQLCKQKNSGVNIEEKHDQAIVNHEKNVGFDSSIGDHEPRPNTSYLYSRA 414
           +Q  LD + T ++ +       + + H   ++N   N+  +  I      P T + ++ A
Sbjct: 634 QQLILDMNFTVEIARFAGYPFKVVQNHASVVINRAINIFSERGINPQSSLPKTEW-FTEA 692

Query: 415 DLKAIN 432
              AIN
Sbjct: 693 AKSAIN 698


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,386,927
Number of Sequences: 28952
Number of extensions: 260199
Number of successful extensions: 657
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)