Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060506.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    73   5e-14
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    25   7.8  

>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 72.5 bits (170), Expect = 5e-14
 Identities = 38/76 (50%), Positives = 45/76 (59%)
 Frame = +1

Query: 388 LKRXMXDYVKSGFINVDKXSKXQLXRSSFMDKTYFKSXKDCXLGTLDRKVXGCXXVCIDX 567
           LKR + +YV SG IN+DK +           K   +  K    GTLD KV GC  +C D 
Sbjct: 54  LKRPIAEYVSSGVINLDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDR 113

Query: 568 ATRLVKSQQNAGKEYV 615
           ATRLVKSQQ+AGKEYV
Sbjct: 114 ATRLVKSQQSAGKEYV 129



 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 27/46 (58%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
 Frame = +3

Query: 258 FKIEP-SEXVKKLDXAYWXLLLKNFDRLNVRTNHYTPLPFGNXPFK 392
           F I+P +    K+D A W LLLKNFD+L VRT HYTP+P GN P K
Sbjct: 10  FMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLK 55


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 23  YGRALCYIFKVLSIN 67
           YG+ L ++FKVLSIN
Sbjct: 79  YGKQLPFLFKVLSIN 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,186
Number of Sequences: 5004
Number of extensions: 31241
Number of successful extensions: 55
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)