Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060506.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1408 - 26353389-26355191                                         69   5e-12
03_03_0094 + 14378953-14380728                                         69   5e-12
04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955     53   2e-07
11_06_0293 + 22018128-22018556                                         51   7e-07
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442...    46   4e-05
01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008     29   2.6  

>07_03_1408 - 26353389-26355191
          Length = 600

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 37/76 (48%), Positives = 44/76 (57%)
 Frame = +1

Query: 388 LKRXMXDYVKSGFINVDKXSKXQLXRSSFMDKTYFKSXKDCXLGTLDRKVXGCXXVCIDX 567
           LKR + +Y++ G IN+DK S           K   +  K    GTLD KV G   VC+D 
Sbjct: 93  LKRPIAEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVDKTGHSGTLDPKVTGNLIVCVDR 152

Query: 568 ATRLVKSQQNAGKEYV 615
           ATRLVKSQQ AGKEYV
Sbjct: 153 ATRLVKSQQGAGKEYV 168



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 27/45 (60%), Positives = 32/45 (71%)
 Frame = +3

Query: 258 FKIEPSEXVKKLDXAYWXLLLKNFDRLNVRTNHYTPLPFGNXPFK 392
           + I+P   V  LD + W LLLKN+DRLNVRT HYTPLP G+ P K
Sbjct: 50  YLIKPQSLVPSLDTSTWPLLLKNYDRLNVRTGHYTPLPSGHSPLK 94


>03_03_0094 + 14378953-14380728
          Length = 591

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 37/76 (48%), Positives = 44/76 (57%)
 Frame = +1

Query: 388 LKRXMXDYVKSGFINVDKXSKXQLXRSSFMDKTYFKSXKDCXLGTLDRKVXGCXXVCIDX 567
           LKR + +Y++ G IN+DK S           K   +  K    GTLD KV G   VC+D 
Sbjct: 97  LKRPIAEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCVDR 156

Query: 568 ATRLVKSQQNAGKEYV 615
           ATRLVKSQQ AGKEYV
Sbjct: 157 ATRLVKSQQGAGKEYV 172



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 26/45 (57%), Positives = 31/45 (68%)
 Frame = +3

Query: 258 FKIEPSEXVKKLDXAYWXLLLKNFDRLNVRTNHYTPLPFGNXPFK 392
           + I+P      LD + W LLLKN+DRLNVRT HYTPLP G+ P K
Sbjct: 54  YLIKPQSVAPPLDTSAWPLLLKNYDRLNVRTGHYTPLPAGHSPLK 98


>04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955
          Length = 286

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 25/33 (75%), Positives = 26/33 (78%)
 Frame = +1

Query: 517 GTLDRKVXGCXXVCIDXATRLVKSQQNAGKEYV 615
           GTLD KV G   VC+D ATRLVKSQQ AGKEYV
Sbjct: 115 GTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYV 147


>11_06_0293 + 22018128-22018556
          Length = 142

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 24/32 (75%), Positives = 25/32 (78%)
 Frame = +1

Query: 517 GTLDRKVXGCXXVCIDXATRLVKSQQNAGKEY 612
           GTLD KV G   VC+D ATRLVKSQQ AGKEY
Sbjct: 76  GTLDPKVTGNLIVCVDLATRLVKSQQGAGKEY 107



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 443 RANXSSHEVVSWIKRILKVEKT 508
           R       VV+WIKR+L+V KT
Sbjct: 51  RVRLDRRSVVAWIKRLLRVNKT 72


>02_02_0421 -
           10042184-10042197,10042442-10042822,10044158-10044261,
           10044634-10044734,10044806-10045147,10045981-10046158,
           10047696-10047776,10049190-10049449
          Length = 486

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 28/78 (35%), Positives = 38/78 (48%)
 Frame = +1

Query: 388 LKRXMXDYVKSGFINVDKXSKXQLXRSSFMDKTYFKSXKDCXLGTLDRKVXGCXXVCIDX 567
           LK+ +  ++  G IN++K S          +K      K    GTLD KV G   VC++ 
Sbjct: 20  LKQPIAKHLCYGVINLNKPSNLLSHEVITWNKNLLHIEKTSHNGTLDPKVTGNLIVCVNR 79

Query: 568 ATRLVKSQQNAGKEYVAF 621
           ATRLVKS      +YV F
Sbjct: 80  ATRLVKSWNGVMLKYVLF 97


>01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008
          Length = 749

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 186 HTFREEKEKKQGWCFVGXFSDXXXFKIEPSEXVK 287
           +T  EE ++   W F+  FS      I PSE VK
Sbjct: 679 YTTAEEDDEASAWLFLANFSSEMMLYIAPSENVK 712


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,148,914
Number of Sequences: 37544
Number of extensions: 179957
Number of successful extensions: 305
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)