Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060506.seq
(686 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U59151-1|AAB94299.1| 514|Homo sapiens Cbf5p homolog protein. 78 3e-14
BC010015-1|AAH10015.1| 514|Homo sapiens dyskeratosis congenita ... 78 3e-14
BC009928-1|AAH09928.1| 514|Homo sapiens dyskeratosis congenita ... 78 3e-14
AJ224481-1|CAA11970.1| 514|Homo sapiens dyskerin protein. 78 3e-14
AJ010395-1|CAB51168.1| 524|Homo sapiens dyskerin protein. 78 3e-14
AF067023-1|AAD20232.1| 514|Homo sapiens dyskerin protein. 78 3e-14
AF067008-1|AAD11815.1| 514|Homo sapiens dyskerin protein. 78 3e-14
>U59151-1|AAB94299.1| 514|Homo sapiens Cbf5p homolog protein.
Length = 514
Score = 77.8 bits (183), Expect = 3e-14
Identities = 39/76 (51%), Positives = 48/76 (63%)
Frame = +1
Query: 388 LKRXMXDYVKSGFINVDKXSKXQLXRSSFMDKTYFKSXKDCXLGTLDRKVXGCXXVCIDX 567
LKR + DY+++GFIN+DK S + + K GTLD KV GC VCI+
Sbjct: 79 LKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIER 138
Query: 568 ATRLVKSQQNAGKEYV 615
ATRLVKSQQ+AGKEYV
Sbjct: 139 ATRLVKSQQSAGKEYV 154
Score = 63.7 bits (148), Expect = 6e-10
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = +3
Query: 258 FKIEPSEXVKKLDXAYWXLLLKNFDRLNVRTNHYTPLPFGNXPFK 392
F I+P V KLD + W LLLKNFD+LNVRT HYTPL G+ P K
Sbjct: 36 FFIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLK 80
>BC010015-1|AAH10015.1| 514|Homo sapiens dyskeratosis congenita 1,
dyskerin protein.
Length = 514
Score = 77.8 bits (183), Expect = 3e-14
Identities = 39/76 (51%), Positives = 48/76 (63%)
Frame = +1
Query: 388 LKRXMXDYVKSGFINVDKXSKXQLXRSSFMDKTYFKSXKDCXLGTLDRKVXGCXXVCIDX 567
LKR + DY+++GFIN+DK S + + K GTLD KV GC VCI+
Sbjct: 79 LKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIER 138
Query: 568 ATRLVKSQQNAGKEYV 615
ATRLVKSQQ+AGKEYV
Sbjct: 139 ATRLVKSQQSAGKEYV 154
Score = 64.1 bits (149), Expect = 4e-10
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = +3
Query: 258 FKIEPSEXVKKLDXAYWXLLLKNFDRLNVRTNHYTPLPFGNXPFK 392
F I+P V KLD + W LLLKNFD+LNVRT HYTPL G+ P K
Sbjct: 36 FLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLK 80
>BC009928-1|AAH09928.1| 514|Homo sapiens dyskeratosis congenita 1,
dyskerin protein.
Length = 514
Score = 77.8 bits (183), Expect = 3e-14
Identities = 39/76 (51%), Positives = 48/76 (63%)
Frame = +1
Query: 388 LKRXMXDYVKSGFINVDKXSKXQLXRSSFMDKTYFKSXKDCXLGTLDRKVXGCXXVCIDX 567
LKR + DY+++GFIN+DK S + + K GTLD KV GC VCI+
Sbjct: 79 LKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIER 138
Query: 568 ATRLVKSQQNAGKEYV 615
ATRLVKSQQ+AGKEYV
Sbjct: 139 ATRLVKSQQSAGKEYV 154
Score = 64.1 bits (149), Expect = 4e-10
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = +3
Query: 258 FKIEPSEXVKKLDXAYWXLLLKNFDRLNVRTNHYTPLPFGNXPFK 392
F I+P V KLD + W LLLKNFD+LNVRT HYTPL G+ P K
Sbjct: 36 FLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLK 80
>AJ224481-1|CAA11970.1| 514|Homo sapiens dyskerin protein.
Length = 514
Score = 77.8 bits (183), Expect = 3e-14
Identities = 39/76 (51%), Positives = 48/76 (63%)
Frame = +1
Query: 388 LKRXMXDYVKSGFINVDKXSKXQLXRSSFMDKTYFKSXKDCXLGTLDRKVXGCXXVCIDX 567
LKR + DY+++GFIN+DK S + + K GTLD KV GC VCI+
Sbjct: 79 LKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIER 138
Query: 568 ATRLVKSQQNAGKEYV 615
ATRLVKSQQ+AGKEYV
Sbjct: 139 ATRLVKSQQSAGKEYV 154
Score = 64.1 bits (149), Expect = 4e-10
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = +3
Query: 258 FKIEPSEXVKKLDXAYWXLLLKNFDRLNVRTNHYTPLPFGNXPFK 392
F I+P V KLD + W LLLKNFD+LNVRT HYTPL G+ P K
Sbjct: 36 FLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLK 80
>AJ010395-1|CAB51168.1| 524|Homo sapiens dyskerin protein.
Length = 524
Score = 77.8 bits (183), Expect = 3e-14
Identities = 39/76 (51%), Positives = 48/76 (63%)
Frame = +1
Query: 388 LKRXMXDYVKSGFINVDKXSKXQLXRSSFMDKTYFKSXKDCXLGTLDRKVXGCXXVCIDX 567
LKR + DY+++GFIN+DK S + + K GTLD KV GC VCI+
Sbjct: 79 LKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIER 138
Query: 568 ATRLVKSQQNAGKEYV 615
ATRLVKSQQ+AGKEYV
Sbjct: 139 ATRLVKSQQSAGKEYV 154
Score = 64.1 bits (149), Expect = 4e-10
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = +3
Query: 258 FKIEPSEXVKKLDXAYWXLLLKNFDRLNVRTNHYTPLPFGNXPFK 392
F I+P V KLD + W LLLKNFD+LNVRT HYTPL G+ P K
Sbjct: 36 FLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLK 80
>AF067023-1|AAD20232.1| 514|Homo sapiens dyskerin protein.
Length = 514
Score = 77.8 bits (183), Expect = 3e-14
Identities = 39/76 (51%), Positives = 48/76 (63%)
Frame = +1
Query: 388 LKRXMXDYVKSGFINVDKXSKXQLXRSSFMDKTYFKSXKDCXLGTLDRKVXGCXXVCIDX 567
LKR + DY+++GFIN+DK S + + K GTLD KV GC VCI+
Sbjct: 79 LKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIER 138
Query: 568 ATRLVKSQQNAGKEYV 615
ATRLVKSQQ+AGKEYV
Sbjct: 139 ATRLVKSQQSAGKEYV 154
Score = 64.1 bits (149), Expect = 4e-10
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = +3
Query: 258 FKIEPSEXVKKLDXAYWXLLLKNFDRLNVRTNHYTPLPFGNXPFK 392
F I+P V KLD + W LLLKNFD+LNVRT HYTPL G+ P K
Sbjct: 36 FLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLK 80
>AF067008-1|AAD11815.1| 514|Homo sapiens dyskerin protein.
Length = 514
Score = 77.8 bits (183), Expect = 3e-14
Identities = 39/76 (51%), Positives = 48/76 (63%)
Frame = +1
Query: 388 LKRXMXDYVKSGFINVDKXSKXQLXRSSFMDKTYFKSXKDCXLGTLDRKVXGCXXVCIDX 567
LKR + DY+++GFIN+DK S + + K GTLD KV GC VCI+
Sbjct: 79 LKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIER 138
Query: 568 ATRLVKSQQNAGKEYV 615
ATRLVKSQQ+AGKEYV
Sbjct: 139 ATRLVKSQQSAGKEYV 154
Score = 64.1 bits (149), Expect = 4e-10
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = +3
Query: 258 FKIEPSEXVKKLDXAYWXLLLKNFDRLNVRTNHYTPLPFGNXPFK 392
F I+P V KLD + W LLLKNFD+LNVRT HYTPL G+ P K
Sbjct: 36 FLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLK 80
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,530,028
Number of Sequences: 237096
Number of extensions: 988786
Number of successful extensions: 1906
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1892
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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