Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060506.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92803-7|CAB07244.1|  445|Caenorhabditis elegans Hypothetical pr...    74   1e-13

>Z92803-7|CAB07244.1|  445|Caenorhabditis elegans Hypothetical
           protein K01G5.5 protein.
          Length = 445

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 37/76 (48%), Positives = 43/76 (56%)
 Frame = +1

Query: 388 LKRXMXDYVKSGFINVDKXSKXQLXRSSFMDKTYFKSXKDCXLGTLDRKVXGCXXVCIDX 567
           LKR + +Y+ SGF N+DK S           K   +  K    GTLD KV GC  VCID 
Sbjct: 67  LKRDIKNYISSGFFNLDKPSNPSSHEVVSWIKRILRCEKTGHSGTLDPKVSGCLIVCIDR 126

Query: 568 ATRLVKSQQNAGKEYV 615
            TRL KSQQ AGKEY+
Sbjct: 127 TTRLAKSQQGAGKEYI 142



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 25/45 (55%), Positives = 30/45 (66%)
 Frame = +3

Query: 258 FKIEPSEXVKKLDXAYWXLLLKNFDRLNVRTNHYTPLPFGNXPFK 392
           F++  S    KLD + W LLLKN+D+LNVRTNHYTP   G  P K
Sbjct: 24  FQLPSSNETAKLDASQWPLLLKNYDKLNVRTNHYTPHVEGVSPLK 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,880,166
Number of Sequences: 27780
Number of extensions: 174398
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)