Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060506.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ...    69   3e-12
At4g17990.1 68417.m02677 hypothetical protein contains Pfam prof...    28   5.0  

>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
           NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
           protein NAP57) {Rattus norvegicus}; contains Pfam
           profiles PF01509: TruB family pseudouridylate synthase
           (N terminal domain), PF01472: PUA domain; supporting
           cDNA gi|8901185|gb|AF234984.2|AF234984
          Length = 565

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 37/76 (48%), Positives = 44/76 (57%)
 Frame = +1

Query: 388 LKRXMXDYVKSGFINVDKXSKXQLXRSSFMDKTYFKSXKDCXLGTLDRKVXGCXXVCIDX 567
           LKR + +Y++ G IN+DK +           K   +  K    GTLD KV G   VCID 
Sbjct: 70  LKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR 129

Query: 568 ATRLVKSQQNAGKEYV 615
           ATRLVKSQQ AGKEYV
Sbjct: 130 ATRLVKSQQGAGKEYV 145



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 23/50 (46%), Positives = 32/50 (64%)
 Frame = +3

Query: 243 SDXXXFKIEPSEXVKKLDXAYWXLLLKNFDRLNVRTNHYTPLPFGNXPFK 392
           +D   + I+P      +D + W +LLKN+DRLNVRT HYTP+  G+ P K
Sbjct: 22  ADTGDYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHSPLK 71


>At4g17990.1 68417.m02677 hypothetical protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 265

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 553 VCIDXATRLVKSQQNAGKEYVAFSTCIQRREYSKSHT 663
           VCI     LV    +AG   V F T +   +YSK +T
Sbjct: 112 VCIGYYITLVAKDPSAGGSLVTFQTKVVHEDYSKINT 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,982,111
Number of Sequences: 28952
Number of extensions: 156981
Number of successful extensions: 342
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)