Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060503.seq
(684 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O15144 Cluster: Actin-related protein 2/3 complex subun... 128 2e-28
UniRef50_UPI0000EBF1A1 Cluster: PREDICTED: hypothetical protein;... 105 1e-21
UniRef50_Q5DFP2 Cluster: SJCHGC09300 protein; n=3; Schistosoma j... 97 4e-19
UniRef50_Q0CNB0 Cluster: ARP2/3 complex 34 kDa subunit; n=10; Fu... 91 2e-17
UniRef50_A5DX90 Cluster: ARP2/3 complex 34 kDa subunit; n=7; Sac... 85 1e-15
UniRef50_O14241 Cluster: ARP2/3 complex 34 kDa subunit; n=10; Di... 76 9e-13
UniRef50_O96623 Cluster: Actin-related protein 2/3 complex subun... 72 1e-11
UniRef50_P53731 Cluster: ARP2/3 complex 34 kDa subunit; n=6; Sac... 70 5e-11
UniRef50_A7P3S1 Cluster: Chromosome chr1 scaffold_5, whole genom... 70 6e-11
UniRef50_A2EN28 Cluster: Arp2/3 complex, 34kD subunit p34-Arc fa... 61 2e-08
UniRef50_UPI0000498C16 Cluster: ARP2/3 complex 34 kda subunit; n... 56 6e-07
UniRef50_Q01CA0 Cluster: Actin-related protein Arp2/3 complex, s... 52 1e-05
UniRef50_Q01HD5 Cluster: OSIGBa0157K09-H0214G12.22 protein; n=4;... 46 9e-04
UniRef50_Q3EBP4 Cluster: Uncharacterized protein At2g33385.1; n=... 45 0.002
UniRef50_Q9SY27 Cluster: T17H7.13; n=1; Arabidopsis thaliana|Rep... 42 0.014
UniRef50_A0CBJ9 Cluster: Chromosome undetermined scaffold_164, w... 41 0.032
UniRef50_UPI00006CF23B Cluster: hypothetical protein TTHERM_0005... 38 0.17
UniRef50_A6RDY5 Cluster: Putative uncharacterized protein; n=1; ... 35 1.6
UniRef50_Q0RZW4 Cluster: Putative uncharacterized protein; n=2; ... 34 2.8
>UniRef50_O15144 Cluster: Actin-related protein 2/3 complex subunit
2; n=55; Metazoa|Rep: Actin-related protein 2/3 complex
subunit 2 - Homo sapiens (Human)
Length = 300
Score = 128 bits (308), Expect = 2e-28
Identities = 59/82 (71%), Positives = 67/82 (81%)
Frame = +2
Query: 8 SDARVGDNISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAG 187
+DA VGDNI Y+TFVLFPRHT A+ARDNTI+L+H FRDYLHYHIKCSK Y+ +RMRAK
Sbjct: 212 TDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTS 271
Query: 188 DLLKVLNRARPHAAARXSERKT 253
D LKVLNRARP A + E KT
Sbjct: 272 DFLKVLNRARPDAEKK--EMKT 291
>UniRef50_UPI0000EBF1A1 Cluster: PREDICTED: hypothetical protein;
n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
Bos taurus
Length = 103
Score = 105 bits (251), Expect = 1e-21
Identities = 49/68 (72%), Positives = 55/68 (80%)
Frame = +2
Query: 50 VLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAGDLLKVLNRARPHAA 229
VLFPRHT A+ARDNTI+L+H FRDYLHYHIKCSK Y+ +RMRAK D LKVLNRARP A
Sbjct: 29 VLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAE 88
Query: 230 ARXSERKT 253
+ E KT
Sbjct: 89 KK--EMKT 94
>UniRef50_Q5DFP2 Cluster: SJCHGC09300 protein; n=3; Schistosoma
japonicum|Rep: SJCHGC09300 protein - Schistosoma
japonicum (Blood fluke)
Length = 389
Score = 97.1 bits (231), Expect = 4e-19
Identities = 40/71 (56%), Positives = 52/71 (73%)
Frame = +2
Query: 8 SDARVGDNISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAG 187
+DA +GDN++Y+TFVLFPRH A TI+L+ R+YLHYHIKCSK Y+ RM K
Sbjct: 215 TDAAIGDNVAYITFVLFPRHLTPATSSRTINLIQTLRNYLHYHIKCSKGYIHRRMHTKTI 274
Query: 188 DLLKVLNRARP 220
+ +K+LNRARP
Sbjct: 275 EFIKILNRARP 285
>UniRef50_Q0CNB0 Cluster: ARP2/3 complex 34 kDa subunit; n=10;
Fungi/Metazoa group|Rep: ARP2/3 complex 34 kDa subunit -
Aspergillus terreus (strain NIH 2624)
Length = 320
Score = 91.1 bits (216), Expect = 2e-17
Identities = 44/76 (57%), Positives = 50/76 (65%)
Frame = +2
Query: 26 DNISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAGDLLKVL 205
D ISYVTFVLFPRH R I + +FRDY HYHIK SK Y+ +RMR + D L+VL
Sbjct: 237 DKISYVTFVLFPRHLTPQRRYENISHIQIFRDYFHYHIKASKAYIHTRMRKRTADFLQVL 296
Query: 206 NRARPHAAARXSERKT 253
NRARP R ERKT
Sbjct: 297 NRARPENEER--ERKT 310
>UniRef50_A5DX90 Cluster: ARP2/3 complex 34 kDa subunit; n=7;
Saccharomycetales|Rep: ARP2/3 complex 34 kDa subunit -
Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 344
Score = 85.4 bits (202), Expect = 1e-15
Identities = 38/66 (57%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Frame = +2
Query: 26 DNISYVTFVLFPRHTCAA-ARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAGDLLKV 202
DN YVTFVLFPRH R+N I + +FR+Y HYHIKCSK Y+ SRMR + + LK+
Sbjct: 254 DNKGYVTFVLFPRHLVRGDKRENCISHIQLFRNYFHYHIKCSKAYMHSRMRFRVKEFLKI 313
Query: 203 LNRARP 220
LNRA+P
Sbjct: 314 LNRAKP 319
>UniRef50_O14241 Cluster: ARP2/3 complex 34 kDa subunit; n=10;
Dikarya|Rep: ARP2/3 complex 34 kDa subunit -
Schizosaccharomyces pombe (Fission yeast)
Length = 317
Score = 75.8 bits (178), Expect = 9e-13
Identities = 37/77 (48%), Positives = 48/77 (62%)
Frame = +2
Query: 23 GDNISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAGDLLKV 202
GD+ +VTFVLF RH R++ I + +FR+ LH+HIK SK Y+ RMR + D KV
Sbjct: 235 GDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQKV 294
Query: 203 LNRARPHAAARXSERKT 253
LNRA+P ERKT
Sbjct: 295 LNRAKPDVEL---ERKT 308
>UniRef50_O96623 Cluster: Actin-related protein 2/3 complex subunit
2; n=2; Dictyostelium discoideum|Rep: Actin-related
protein 2/3 complex subunit 2 - Dictyostelium discoideum
(Slime mold)
Length = 293
Score = 72.1 bits (169), Expect = 1e-11
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +2
Query: 2 GTSDARVGD-NISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRA 178
G R G N +V+FVLFP H + DL+ FRDYLHYHIKC+K Y+ + MR
Sbjct: 204 GVKGVRAGQANHGFVSFVLFPAHI--KKPQESADLIQTFRDYLHYHIKCAKGYMHTSMRN 261
Query: 179 KAGDLLKVLNRARP 220
+ L++VLNRA+P
Sbjct: 262 RVESLIQVLNRAKP 275
>UniRef50_P53731 Cluster: ARP2/3 complex 34 kDa subunit; n=6;
Saccharomycetales|Rep: ARP2/3 complex 34 kDa subunit -
Saccharomyces cerevisiae (Baker's yeast)
Length = 342
Score = 70.1 bits (164), Expect = 5e-11
Identities = 32/61 (52%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Frame = +2
Query: 38 YVTFVLFPRH-TCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAGDLLKVLNRA 214
++TFVLFPRH + ++I L +FR+Y HYHIKCSK Y+ SRMR + +KVLNRA
Sbjct: 253 FITFVLFPRHFQTKELQFHSICQLTLFRNYFHYHIKCSKAYMHSRMRFRVDSFIKVLNRA 312
Query: 215 R 217
+
Sbjct: 313 K 313
>UniRef50_A7P3S1 Cluster: Chromosome chr1 scaffold_5, whole genome
shotgun sequence; n=5; Magnoliophyta|Rep: Chromosome
chr1 scaffold_5, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 328
Score = 69.7 bits (163), Expect = 6e-11
Identities = 30/73 (41%), Positives = 46/73 (63%)
Frame = +2
Query: 2 GTSDARVGDNISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAK 181
GT+ + N +VTFV+FPRH D T+ L FR Y+ YH+KCS+ ++ +RMR +
Sbjct: 224 GTAGEALSANAGFVTFVIFPRHVEGKKLDRTVWSLSTFRAYVSYHVKCSEGFMHTRMRRR 283
Query: 182 AGDLLKVLNRARP 220
L++ L+RA+P
Sbjct: 284 VESLIQALDRAKP 296
>UniRef50_A2EN28 Cluster: Arp2/3 complex, 34kD subunit p34-Arc
family protein; n=1; Trichomonas vaginalis G3|Rep:
Arp2/3 complex, 34kD subunit p34-Arc family protein -
Trichomonas vaginalis G3
Length = 307
Score = 61.3 bits (142), Expect = 2e-08
Identities = 28/81 (34%), Positives = 44/81 (54%)
Frame = +2
Query: 11 DARVGDNISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAGD 190
+ + G +YV+ L R +T + MFRDYLHYHIKC+K ++ +MR +
Sbjct: 221 EVKDGSLFAYVSMSLLAASLSERKRQDTSVYVPMFRDYLHYHIKCTKAFLHQKMRNRTAL 280
Query: 191 LLKVLNRARPHAAARXSERKT 253
LLK+L+ A+P + + T
Sbjct: 281 LLKILDEAKPEPKVKVARTVT 301
>UniRef50_UPI0000498C16 Cluster: ARP2/3 complex 34 kda subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: ARP2/3 complex 34
kda subunit - Entamoeba histolytica HM-1:IMSS
Length = 293
Score = 56.4 bits (130), Expect = 6e-07
Identities = 33/83 (39%), Positives = 49/83 (59%)
Frame = +2
Query: 5 TSDARVGDNISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKA 184
T + DN Y++F+L RH + T+++L R+Y+++HIKCSK ++ RMR K
Sbjct: 209 TVEGLAEDNC-YISFLLEKRHLNNPQK--TLEVLMSCRNYINFHIKCSKAFLHIRMRNKV 265
Query: 185 GDLLKVLNRARPHAAARXSERKT 253
L VLNRA+P R E+KT
Sbjct: 266 SHLQLVLNRAKPE---REVEKKT 285
>UniRef50_Q01CA0 Cluster: Actin-related protein Arp2/3 complex,
subunit ARPC2; n=2; Ostreococcus|Rep: Actin-related
protein Arp2/3 complex, subunit ARPC2 - Ostreococcus
tauri
Length = 329
Score = 52.0 bits (119), Expect = 1e-05
Identities = 26/63 (41%), Positives = 36/63 (57%)
Frame = +2
Query: 29 NISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAGDLLKVLN 208
N YV+FVLF RH ++T+ + F ++ +HIK SK Y SRMR K L +L
Sbjct: 246 NGGYVSFVLFKRHVAEDRLESTVWNILTFHAFVSFHIKYSKAYWHSRMRNKVESWLSILK 305
Query: 209 RAR 217
RA+
Sbjct: 306 RAK 308
>UniRef50_Q01HD5 Cluster: OSIGBa0157K09-H0214G12.22 protein; n=4;
Oryza sativa|Rep: OSIGBa0157K09-H0214G12.22 protein -
Oryza sativa (Rice)
Length = 368
Score = 46.0 bits (104), Expect = 9e-04
Identities = 21/63 (33%), Positives = 36/63 (57%)
Frame = +2
Query: 29 NISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAGDLLKVLN 208
N +V+F + RH T +L F+ Y+ YHIKC++ Y+ SRMR + + +V++
Sbjct: 224 NGGFVSFDILARHVKGRRAARTAWILLNFQSYVKYHIKCTRSYIQSRMRKRLEIMTEVID 283
Query: 209 RAR 217
A+
Sbjct: 284 DAK 286
>UniRef50_Q3EBP4 Cluster: Uncharacterized protein At2g33385.1; n=3;
core eudicotyledons|Rep: Uncharacterized protein
At2g33385.1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 365
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/72 (34%), Positives = 35/72 (48%)
Frame = +2
Query: 29 NISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAGDLLKVLN 208
N +V+F + RH D T+ L F YHIKCS+ Y+ RMR + L+K+LN
Sbjct: 223 NSGFVSFDITSRHIEGKRLDKTVWNLLNFYACAKYHIKCSRGYIQRRMRKRMETLVKLLN 282
Query: 209 RARPHAAARXSE 244
A +E
Sbjct: 283 NTSLEEEAAQNE 294
>UniRef50_Q9SY27 Cluster: T17H7.13; n=1; Arabidopsis thaliana|Rep:
T17H7.13 - Arabidopsis thaliana (Mouse-ear cress)
Length = 415
Score = 41.9 bits (94), Expect = 0.014
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 2 GTSDARVGDNISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVY 157
G + N +VTFV+FPRH D T+ L F Y+ YH+K +Y
Sbjct: 344 GAPKETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKVHILY 395
>UniRef50_A0CBJ9 Cluster: Chromosome undetermined scaffold_164,
whole genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_164,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 326
Score = 40.7 bits (91), Expect = 0.032
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +2
Query: 8 SDARVGDNISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRM 172
S+ +V N +T LF + + L FR YLHYHI SK Y+ SR+
Sbjct: 237 SNIKVDPNSQLITMTLFKAQHFSKNIEQLSTFLQGFRQYLHYHIHASKTYLHSRI 291
>UniRef50_UPI00006CF23B Cluster: hypothetical protein
TTHERM_00053820; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00053820 - Tetrahymena
thermophila SB210
Length = 333
Score = 38.3 bits (85), Expect = 0.17
Identities = 26/81 (32%), Positives = 34/81 (41%)
Frame = +2
Query: 29 NISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAGDLLKVLN 208
N +VT F + D + L FR YLHYHI SK Y+ R+ L L
Sbjct: 239 NFQFVT-AFFKKQHLNGDTDEVCNFLGTFRQYLHYHISASKSYLHIRLLKNINTNLTNLQ 297
Query: 209 RARPHAAARXSERKTTRAELL 271
R + + R + R ELL
Sbjct: 298 RTKFEQEEERNYR-SQRDELL 317
>UniRef50_A6RDY5 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 724
Score = 35.1 bits (77), Expect = 1.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 16 QSG*QHQLRHICAVPAAHVRGGARQHHRPAAHVPRLPALPHQVL 147
Q Q +LRH + PA + HHRP+++ + P +PH L
Sbjct: 563 QKNMQGELRHFPSKPAYQLNSNQLTHHRPSSNTSQDPTMPHHHL 606
>UniRef50_Q0RZW4 Cluster: Putative uncharacterized protein; n=2;
Rhodococcus|Rep: Putative uncharacterized protein -
Rhodococcus sp. (strain RHA1)
Length = 359
Score = 34.3 bits (75), Expect = 2.8
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 70 VRGGARQHHRPAA-HVPRLPALPHQVLQGVRXLAHA 174
V G R+ HRPA H PR PALP + L G+ L A
Sbjct: 187 VHPGRRRDHRPAGKHRPRHPALPRRQLSGIDDLPGA 222
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 562,626,019
Number of Sequences: 1657284
Number of extensions: 9184980
Number of successful extensions: 23889
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 23111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23878
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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