Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060503.seq
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0107 + 26519990-26520055,26520899-26521029,26521113-265211...    53   2e-07
04_04_0486 - 25582072-25582283,25582366-25582420,25582503-255825...    46   3e-05
08_02_0806 + 21403911-21404203,21406377-21406507,21406851-214069...    31   0.64 
02_05_1256 - 35281926-35282635,35282711-35283112,35283508-35283814     30   2.0  

>01_06_0107 +
           26519990-26520055,26520899-26521029,26521113-26521179,
           26521810-26522017,26522554-26522723,26522904-26522981,
           26523271-26523403,26523451-26523578,26524188-26524244,
           26524726-26524878
          Length = 396

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 23/66 (34%), Positives = 41/66 (62%)
 Frame = +2

Query: 29  NISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAGDLLKVLN 208
           +++++  V+FPRH      D T+  L  F  Y+ YH+KCS+ ++ +RMR +   L++ L+
Sbjct: 290 SLTHLYAVVFPRHVEGKKLDKTVWSLLTFHAYVSYHVKCSEGFMHTRMRRRVETLIQALD 349

Query: 209 RARPHA 226
           RA+  A
Sbjct: 350 RAKSDA 355


>04_04_0486 -
           25582072-25582283,25582366-25582420,25582503-25582559,
           25582674-25582765,25583148-25583280,25583357-25583434,
           25583531-25583676,25583702-25583749,25583804-25584011,
           25584154-25584220,25584441-25584499
          Length = 384

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 21/63 (33%), Positives = 36/63 (57%)
 Frame = +2

Query: 29  NISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAGDLLKVLN 208
           N  +V+F +  RH        T  +L  F+ Y+ YHIKC++ Y+ SRMR +   + +V++
Sbjct: 240 NGGFVSFDILARHVKGRRAARTAWILLNFQSYVKYHIKCTRSYIQSRMRKRLEIMTEVID 299

Query: 209 RAR 217
            A+
Sbjct: 300 DAK 302


>08_02_0806 +
           21403911-21404203,21406377-21406507,21406851-21406963,
           21407478-21407594,21407611-21407803,21407890-21408105,
           21408272-21408909
          Length = 566

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 547 YLKDRLSVTSIHILHFPECPFGTSQSTYYNIVLMPFHETFLP 672
           YLK +L+  S   LHF  CPF    ++   +V  P++    P
Sbjct: 64  YLKAKLAAESFQPLHFAICPFRVDATSPSTLVAYPYNFHLFP 105


>02_05_1256 - 35281926-35282635,35282711-35283112,35283508-35283814
          Length = 472

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 89  NTIDLLHMFRDY--LHYHIKCSKVYVXSRMRAKAGD 190
           + +  LHM+ D+  +H  IK S V +   +RAK GD
Sbjct: 257 HAVTYLHMYADHPIIHRDIKSSNVLLTPSLRAKVGD 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,688,477
Number of Sequences: 37544
Number of extensions: 267993
Number of successful extensions: 782
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)