Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060503.seq
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37784| Best HMM Match : No HMM Matches (HMM E-Value=.)             107   1e-23
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  

>SB_37784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score =  107 bits (256), Expect = 1e-23
 Identities = 47/80 (58%), Positives = 62/80 (77%)
 Frame = +2

Query: 14  ARVGDNISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAGDL 193
           A  G+NI+Y+TFVL PRHT   AR+ TI+L+H FR+YLHYHIKCSK Y+ +RMRA+  D 
Sbjct: 111 ASTGENIAYITFVLEPRHTNPKAREGTINLIHTFRNYLHYHIKCSKAYLHTRMRARTADF 170

Query: 194 LKVLNRARPHAAARXSERKT 253
           +K+LNRARP    + +E+KT
Sbjct: 171 IKILNRARPE--PKTTEKKT 188


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 164 SXRTPWST*CGSAGSRGTCAAGRWCCRAPPRTC 66
           S +TPW   C ++ + G CAA    C A  RTC
Sbjct: 107 SAQTPWGANCTNSTTEGFCAAS-MSCGAKNRTC 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,201,964
Number of Sequences: 59808
Number of extensions: 312817
Number of successful extensions: 893
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)