Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060503.seq
         (684 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50523-1|AAC50874.1|  245|Homo sapiens unknown protein.               128   2e-29
BT006898-1|AAP35544.1|  300|Homo sapiens actin related protein 2...   128   2e-29
BC000590-1|AAH00590.1|  300|Homo sapiens actin related protein 2...   128   2e-29
AF006085-1|AAB64190.1|  300|Homo sapiens p34-Arc protein.             128   2e-29
AC097483-2|AAX93213.1|  300|Homo sapiens unknown protein.             128   2e-29
AF279893-1|AAK07550.1|  200|Homo sapiens PNAS-139 protein.             33   0.72 

>U50523-1|AAC50874.1|  245|Homo sapiens unknown protein.
          Length = 245

 Score =  128 bits (308), Expect = 2e-29
 Identities = 59/82 (71%), Positives = 67/82 (81%)
 Frame = +2

Query: 8   SDARVGDNISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAG 187
           +DA VGDNI Y+TFVLFPRHT A+ARDNTI+L+H FRDYLHYHIKCSK Y+ +RMRAK  
Sbjct: 157 TDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTS 216

Query: 188 DLLKVLNRARPHAAARXSERKT 253
           D LKVLNRARP A  +  E KT
Sbjct: 217 DFLKVLNRARPDAEKK--EMKT 236


>BT006898-1|AAP35544.1|  300|Homo sapiens actin related protein 2/3
           complex, subunit 2, 34kDa protein.
          Length = 300

 Score =  128 bits (308), Expect = 2e-29
 Identities = 59/82 (71%), Positives = 67/82 (81%)
 Frame = +2

Query: 8   SDARVGDNISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAG 187
           +DA VGDNI Y+TFVLFPRHT A+ARDNTI+L+H FRDYLHYHIKCSK Y+ +RMRAK  
Sbjct: 212 TDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTS 271

Query: 188 DLLKVLNRARPHAAARXSERKT 253
           D LKVLNRARP A  +  E KT
Sbjct: 272 DFLKVLNRARPDAEKK--EMKT 291


>BC000590-1|AAH00590.1|  300|Homo sapiens actin related protein 2/3
           complex, subunit 2, 34kDa protein.
          Length = 300

 Score =  128 bits (308), Expect = 2e-29
 Identities = 59/82 (71%), Positives = 67/82 (81%)
 Frame = +2

Query: 8   SDARVGDNISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAG 187
           +DA VGDNI Y+TFVLFPRHT A+ARDNTI+L+H FRDYLHYHIKCSK Y+ +RMRAK  
Sbjct: 212 TDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTS 271

Query: 188 DLLKVLNRARPHAAARXSERKT 253
           D LKVLNRARP A  +  E KT
Sbjct: 272 DFLKVLNRARPDAEKK--EMKT 291


>AF006085-1|AAB64190.1|  300|Homo sapiens p34-Arc protein.
          Length = 300

 Score =  128 bits (308), Expect = 2e-29
 Identities = 59/82 (71%), Positives = 67/82 (81%)
 Frame = +2

Query: 8   SDARVGDNISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAG 187
           +DA VGDNI Y+TFVLFPRHT A+ARDNTI+L+H FRDYLHYHIKCSK Y+ +RMRAK  
Sbjct: 212 TDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTS 271

Query: 188 DLLKVLNRARPHAAARXSERKT 253
           D LKVLNRARP A  +  E KT
Sbjct: 272 DFLKVLNRARPDAEKK--EMKT 291


>AC097483-2|AAX93213.1|  300|Homo sapiens unknown protein.
          Length = 300

 Score =  128 bits (308), Expect = 2e-29
 Identities = 59/82 (71%), Positives = 67/82 (81%)
 Frame = +2

Query: 8   SDARVGDNISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAG 187
           +DA VGDNI Y+TFVLFPRHT A+ARDNTI+L+H FRDYLHYHIKCSK Y+ +RMRAK  
Sbjct: 212 TDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTS 271

Query: 188 DLLKVLNRARPHAAARXSERKT 253
           D LKVLNRARP A  +  E KT
Sbjct: 272 DFLKVLNRARPDAEKK--EMKT 291


>AF279893-1|AAK07550.1|  200|Homo sapiens PNAS-139 protein.
          Length = 200

 Score = 33.5 bits (73), Expect = 0.72
 Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 8   SDARVGDNISYVTFVLFP-RHTCAAARDNTIDLL 106
           +DA VGDNI Y+TF   P  H C  +R +TI+L+
Sbjct: 157 TDAAVGDNIGYITFCAVPFVHQCQCSR-HTINLV 189


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,752,775
Number of Sequences: 237096
Number of extensions: 1393523
Number of successful extensions: 2651
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2651
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)