Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060503.seq
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006815-2|AAL32261.1|  301|Caenorhabditis elegans Hypothetical ...   123   1e-28
AF016444-6|AAB65933.1|  330|Caenorhabditis elegans Serpentine re...    27   9.4  

>AC006815-2|AAL32261.1|  301|Caenorhabditis elegans Hypothetical
           protein Y6D11A.2 protein.
          Length = 301

 Score =  123 bits (296), Expect = 1e-28
 Identities = 56/81 (69%), Positives = 64/81 (79%)
 Frame = +2

Query: 11  DARVGDNISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAGD 190
           +ARVGDN+ Y+TFVLFPRHT    +DNTIDL+H FRDYLHYHIKCSKVY+ +RMRAK  D
Sbjct: 215 EARVGDNVGYITFVLFPRHTNKKTKDNTIDLIHSFRDYLHYHIKCSKVYLHTRMRAKTTD 274

Query: 191 LLKVLNRARPHAAARXSERKT 253
            LKVLNRARP       E+KT
Sbjct: 275 FLKVLNRARPEV---KGEKKT 292


>AF016444-6|AAB65933.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 7 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 616 SQSTYYNIVLMPFHETFLPNYTA 684
           + +TYY  ++ PF E F+P  TA
Sbjct: 157 TMTTYYAFLIFPFKEPFMPYCTA 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,193,366
Number of Sequences: 27780
Number of extensions: 224605
Number of successful extensions: 654
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)