Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060503.seq
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30825.1 68414.m03769 actin-related protein 2/3 complex 34kDa...    59   2e-09
At2g33385.1 68415.m04092 actin-related protein 2/3 complex 34kDa...    45   5e-05
At5g64470.2 68418.m08100 expressed protein similar to unknown pr...    28   5.0  
At5g64470.1 68418.m08099 expressed protein similar to unknown pr...    28   5.0  
At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r...    28   5.0  
At3g04720.1 68416.m00508 hevein-like protein (HEL) identical to ...    27   8.8  
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ...    27   8.8  
At1g79670.2 68414.m09292 wall-associated kinase, putative simila...    27   8.8  
At1g79670.1 68414.m09291 wall-associated kinase, putative simila...    27   8.8  

>At1g30825.1 68414.m03769 actin-related protein 2/3 complex 34kDa
           subunit family / arp2/3 complex 34kDa subunit family
           contains Pfam PF04045: Arp2/3 complex, 34kD subunit
           p34-Arc; similar to ARP2/3 complex 34 kDa subunit
           (P34-ARC) (Swiss-Prot:O96623) [Dictyostelium
           discoideum]; similar to ARP2/3 complex 34 kDa subunit
           (P34-ARC) (Actin-related protein 2/3 complex subunit 2)
           (Swiss-Prot:O15144) [Homo sapiens]
          Length = 318

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 27/84 (32%), Positives = 45/84 (53%)
 Frame = +2

Query: 2   GTSDARVGDNISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAK 181
           G     +  N  +VTFV+FPRH      D T+  L  F  Y+ YH+K S+ ++ +RMR +
Sbjct: 220 GAPKETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKFSEGFMHTRMRRR 279

Query: 182 AGDLLKVLNRARPHAAARXSERKT 253
              +++ L++A+P    R    K+
Sbjct: 280 VESMIQALDQAKPLEKTRSMNNKS 303


>At2g33385.1 68415.m04092 actin-related protein 2/3 complex 34kDa
           subunit family / arp2/3 complex 34kDa subunit family low
           similarity to SP|O15144| ARP2/3 complex 34 kDa subunit
           (P34-ARC) (Actin-related protein 2/3 complex subunit 2)
           {Homo sapiens}; contains Pfam profile PF04045: Arp2/3
           complex, 34 kD subunit p34-Arc
          Length = 365

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 25/72 (34%), Positives = 35/72 (48%)
 Frame = +2

Query: 29  NISYVTFVLFPRHTCAAARDNTIDLLHMFRDYLHYHIKCSKVYVXSRMRAKAGDLLKVLN 208
           N  +V+F +  RH      D T+  L  F     YHIKCS+ Y+  RMR +   L+K+LN
Sbjct: 223 NSGFVSFDITSRHIEGKRLDKTVWNLLNFYACAKYHIKCSRGYIQRRMRKRMETLVKLLN 282

Query: 209 RARPHAAARXSE 244
                  A  +E
Sbjct: 283 NTSLEEEAAQNE 294


>At5g64470.2 68418.m08100 expressed protein similar to unknown
           protein (gb|AAD15463.1)
          Length = 407

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 330 VLRRPVTSSVTRPPP 374
           +LRRP+TS++  PPP
Sbjct: 40  ILRRPITSNIASPPP 54


>At5g64470.1 68418.m08099 expressed protein similar to unknown
           protein (gb|AAD15463.1)
          Length = 325

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 330 VLRRPVTSSVTRPPP 374
           +LRRP+TS++  PPP
Sbjct: 40  ILRRPITSNIASPPP 54


>At4g29380.1 68417.m04197 protein kinase family protein / WD-40 repeat
            family protein contains Pfam PF00400: WD domain, G-beta
            repeat; contains Pfam PF00069: Protein kinase domain;
            contains PF02985: HEAT repeat; similar to adaptor protein
            (GI:1817584) [Homo sapiens]; similar to VPS15 protein
            (GI:6103009) [Pichia pastoris]
          Length = 1494

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 495  TLQCTQRPLVYLTTGVNNLKLFKLQGG 415
            ++  T +PL+Y+  G N + L+  +GG
Sbjct: 1292 SVSTTMKPLIYVAAGCNEVSLWNAEGG 1318


>At3g04720.1 68416.m00508 hevein-like protein (HEL) identical to
           SP|P43082 Hevein-like protein precursor {Arabidopsis
           thaliana}; similar to SP|P09762 Wound-induced protein
           WIN2 precursor {Solanum tuberosum}; contains Pfam
           profile PF00187: Chitin recognition protein
          Length = 212

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 149 WST*CGSAGSRGTCAAGRWCCRAP-PRTCAAGTAQM 45
           W+  CG AG RG  + G+ C R    RT AA T ++
Sbjct: 117 WTAFCGPAGPRGQASCGK-CLRVKNTRTNAAVTVRI 151


>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
           contains Pfam domain PF02141: DENN (AEX-3) domain
          Length = 976

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 258 RVVLRSEXRAAAC--GRARLSTLSRSPALARMREXTYTLEHL 139
           +V +R +  A  C  G  +   L R+P+L+ + E  Y  EHL
Sbjct: 396 KVAMRPKDLATFCFPGGVKARLLERTPSLSDLNELVYGQEHL 437


>At1g79670.2 68414.m09292 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 714

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 282 LSVTLRRKVDAEHSVRVLRRPVTSS 356
           +S+TLR  +D+ + V  ++ PVTSS
Sbjct: 88  VSITLRSSIDSSYGVVHIKSPVTSS 112


>At1g79670.1 68414.m09291 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 751

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 282 LSVTLRRKVDAEHSVRVLRRPVTSS 356
           +S+TLR  +D+ + V  ++ PVTSS
Sbjct: 88  VSITLRSSIDSSYGVVHIKSPVTSS 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,065,618
Number of Sequences: 28952
Number of extensions: 195329
Number of successful extensions: 447
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)