Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060502.seq
(684 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 189 6e-47
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 87 3e-16
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 73 5e-12
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 73 7e-12
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 70 5e-11
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 70 6e-11
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 69 1e-10
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 69 1e-10
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 68 2e-10
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 64 2e-09
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 64 4e-09
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 56 1e-06
UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic virus|... 43 0.006
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 43 0.006
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 42 0.019
UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root... 38 0.17
UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Rep... 36 0.92
UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei... 36 0.92
UniRef50_Q9VXE6 Cluster: CG4453-PA; n=14; melanogaster subgroup|... 35 1.6
UniRef50_Q2W8H3 Cluster: Response regulator; n=2; Magnetospirill... 35 2.1
UniRef50_P55111 Cluster: Zinc metalloproteinase precursor; n=2; ... 35 2.1
UniRef50_Q3Y0B0 Cluster: Putative uncharacterized protein precur... 34 2.8
UniRef50_A7H6H7 Cluster: Putative uncharacterized protein precur... 34 2.8
UniRef50_UPI000065EB6B Cluster: pleckstrin homology domain conta... 33 4.9
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 33 4.9
UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|... 33 4.9
UniRef50_UPI000023CEE9 Cluster: hypothetical protein FG02807.1; ... 33 6.5
UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotio... 33 6.5
UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pep... 33 6.5
UniRef50_Q7XRK7 Cluster: OSJNBa0027P08.23 protein; n=3; Oryza sa... 33 6.5
UniRef50_UPI0000E483F4 Cluster: PREDICTED: similar to KIAA1875 p... 33 8.6
UniRef50_UPI0000DA2D46 Cluster: PREDICTED: hypothetical protein;... 33 8.6
UniRef50_Q9ATY4 Cluster: MAP kinase phosphatase; n=7; Poaceae|Re... 33 8.6
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 189 bits (460), Expect = 6e-47
Identities = 84/84 (100%), Positives = 84/84 (100%)
Frame = +3
Query: 3 YRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGH 182
YRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGH
Sbjct: 983 YRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGH 1042
Query: 183 RALTFCSSQGSTFQAPAQIFVDSN 254
RALTFCSSQGSTFQAPAQIFVDSN
Sbjct: 1043 RALTFCSSQGSTFQAPAQIFVDSN 1066
Score = 178 bits (434), Expect = 9e-44
Identities = 85/90 (94%), Positives = 88/90 (97%)
Frame = +2
Query: 254 LASVHVSATLVATTRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGG 433
+ASVHVSATLVATTRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGG
Sbjct: 1067 VASVHVSATLVATTRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGG 1126
Query: 434 MELITSPIKERKTILRGGSYDFSAYEATKK 523
MELITSPIKERKTILRGGSYDFSAY + +K
Sbjct: 1127 MELITSPIKERKTILRGGSYDFSAYRSYQK 1156
Score = 61.7 bits (143), Expect = 2e-08
Identities = 31/43 (72%), Positives = 31/43 (72%)
Frame = +1
Query: 508 RSYQKRHHRMTNFKFDPAHTRGSSFYIWPNHYLANDTSDIIIF 636
RSYQKRHHRMTNFKFDPAHTR ANDTSDIIIF
Sbjct: 1152 RSYQKRHHRMTNFKFDPAHTRAPR-STSAKPLPANDTSDIIIF 1193
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 87.4 bits (207), Expect = 3e-16
Identities = 42/87 (48%), Positives = 50/87 (57%)
Frame = +3
Query: 9 DFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRA 188
DFYC WT RLP +A FFGV TTNP G + P+L S AR GHRA
Sbjct: 1172 DFYCLWTRRLPRLVADFFGVPTTNPTRGHLAFASLNTTQSPLLVPSDSMARALTAGGHRA 1231
Query: 189 LTFCSSQGSTFQAPAQIFVDSNWLLST 269
+T+ +SQGST+ AP IF+D N L T
Sbjct: 1232 ITYAASQGSTYPAPVHIFLDRNSNLVT 1258
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 73.3 bits (172), Expect = 5e-12
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Frame = +3
Query: 3 YRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGH 182
Y D YC W++R+P +AR F + + N +G IG PH P+LT+S ++ G+
Sbjct: 1098 YIDMYCWWSYRIPQCIARLFQIHSFNAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGY 1157
Query: 183 RALTFCSSQGSTFQAPAQIFVD--SNWLLS 266
R+ T SSQG TF PA I +D + WL S
Sbjct: 1158 RSCTISSSQGLTFCDPAIIVLDNYTKWLSS 1187
Score = 37.9 bits (84), Expect = 0.23
Identities = 24/70 (34%), Positives = 33/70 (47%)
Frame = +2
Query: 281 LVATTRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIK 460
LVA TRSRSGV F G G++ +F N+ F + ++LITSP+
Sbjct: 1191 LVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFPSLFPQLKLITSPLT 1250
Query: 461 ERKTILRGGS 490
R L G +
Sbjct: 1251 TRGPKLNGAT 1260
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 72.9 bits (171), Expect = 7e-12
Identities = 38/89 (42%), Positives = 47/89 (52%)
Frame = +3
Query: 3 YRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGH 182
Y D YC WT+R P +A FGV T N EGFI + + P L +S TA GH
Sbjct: 1021 YIDCYCWWTYRCPKAVADLFGVKTFNSNEGFIRAVLSHPPNLPNLVNSIATANTMQSLGH 1080
Query: 183 RALTFCSSQGSTFQAPAQIFVDSNWLLST 269
ALT SSQG T+ P + +D + LL T
Sbjct: 1081 HALTISSSQGMTYSDPVTVLLDRHSLLIT 1109
Score = 39.5 bits (88), Expect = 0.075
Identities = 24/69 (34%), Positives = 34/69 (49%)
Frame = +2
Query: 281 LVATTRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIK 460
LVA TRSRSG+ F G+ GT+ +F L P + ++ F + LI PI+
Sbjct: 1114 LVALTRSRSGIYFIGSMYTASGSAGTSYMFSCALTGLPVDMMSAFP-LFHTLPLIHEPIR 1172
Query: 461 ERKTILRGG 487
R+ L G
Sbjct: 1173 SRRHRLVAG 1181
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 70.1 bits (164), Expect = 5e-11
Identities = 33/84 (39%), Positives = 47/84 (55%)
Frame = +3
Query: 3 YRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGH 182
Y D YC W+HR+P +AR FGV ++N EG++G L SQ +A+ G+
Sbjct: 1050 YIDCYCLWSHRIPQCVARCFGVESSNEHEGYVGFSSFIAPQDITLACSQSSAKTLRDAGY 1109
Query: 183 RALTFCSSQGSTFQAPAQIFVDSN 254
A T SSQGST++ P + +D N
Sbjct: 1110 PATTVSSSQGSTYRTPINLLLDRN 1133
Score = 41.1 bits (92), Expect = 0.024
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +2
Query: 272 SATLVATTRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITS 451
+ +LVA TRS + TG+ + Q P P+F A+ N + + F + +I +
Sbjct: 1140 AVSLVAATRSTMAINMTGDRDVLQQGPHNNPVFSALYNANLISLHSLFPTLFAKLPIIRT 1199
Query: 452 PIKERKTILRGGS 490
I R+ +L GG+
Sbjct: 1200 AITSRRGMLTGGN 1212
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 69.7 bits (163), Expect = 6e-11
Identities = 36/84 (42%), Positives = 45/84 (53%)
Frame = +3
Query: 3 YRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGH 182
Y D YC W+HR+P +ARFF V TT+ EG + + LT+S AR G
Sbjct: 1158 YMDMYCLWSHRIPRNVARFFRVKTTSQVEGTVTTSLVLAPGWKQLTNSMNAARTLNDCGF 1217
Query: 183 RALTFCSSQGSTFQAPAQIFVDSN 254
A T SSQGST+ PA I +D N
Sbjct: 1218 AATTIASSQGSTYSHPACINLDKN 1241
Score = 37.9 bits (84), Expect = 0.23
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Frame = +2
Query: 206 SRFNFPGSCPNLRR--LQLASVHVSATLVATTRSRSGVIFTGNHRLFQSRPGTAP--LFE 373
S ++ P +C NL + QL+ H +LVA TRS+ G++FTG+ L + PG++ LF
Sbjct: 1228 STYSHP-ACINLDKNSSQLSHAH---SLVALTRSKVGIMFTGD--LSRLNPGSSSNLLFS 1281
Query: 374 AMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGGS 490
+ + + F E IT P+ R GG+
Sbjct: 1282 KFKQGESVDLRSLFPFEFPCCPTITEPLSSRPKFCLGGA 1320
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 68.9 bits (161), Expect = 1e-10
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 YRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIG-RRDNPHKSYPILTSSQQTARVCAGTG 179
Y D+YC W+HR+P +A FF + TT+ Q GF +R+ P+ IL +SQ G
Sbjct: 1211 YLDYYCMWSHRVPQNVAAFFHIKTTSKQPGFCRYQRELPNSR--ILANSQNAGHTLQQCG 1268
Query: 180 HRALTFCSSQGSTFQAPAQIFVDSN 254
+ A+T SSQGST+ A I +D N
Sbjct: 1269 YAAVTIASSQGSTYDNAACIHLDRN 1293
Score = 45.6 bits (103), Expect = 0.001
Identities = 26/85 (30%), Positives = 42/85 (49%)
Frame = +2
Query: 278 TLVATTRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPI 457
++VA TRS+ GVIFTG+ + P + +F + + + F NE ++T P+
Sbjct: 1302 SMVALTRSKVGVIFTGDPAQLSNAPSSNRMFSEFFSGRTRPLHDWFHNEFPKATVLTEPL 1361
Query: 458 KERKTILRGGSYDFSAYEATKKDIT 532
K R L G + +S + KD T
Sbjct: 1362 KTRGPRLTGAASPYSKVFPSGKDST 1386
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 68.5 bits (160), Expect = 1e-10
Identities = 34/85 (40%), Positives = 46/85 (54%)
Frame = +3
Query: 9 DFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRA 188
D YC W++R+P +AR F V T + +EGFI + + L +S TA GH A
Sbjct: 998 DCYCWWSYRIPKSIARLFNVHTFSSEEGFISTISSHRPNGKNLVNSISTADTMHQLGHHA 1057
Query: 189 LTFCSSQGSTFQAPAQIFVDSNWLL 263
LT SSQG TF P I +D + +L
Sbjct: 1058 LTISSSQGMTFDTPVSILLDRHTVL 1082
Score = 44.0 bits (99), Expect = 0.003
Identities = 30/83 (36%), Positives = 37/83 (44%)
Frame = +2
Query: 272 SATLVATTRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITS 451
S T VA TRS+ GV F GN + + G +F A L Q F + I
Sbjct: 1086 SNTFVALTRSKKGVEFLGNLTVASNNFGNNYMFSAALTSQEVCMSQCFPRLFDSLPKIYE 1145
Query: 452 PIKERKTILRGGSYDFSAYEATK 520
PIK R+ L GG D S E +K
Sbjct: 1146 PIKSRRVRLTGG--DISQGEISK 1166
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 67.7 bits (158), Expect = 2e-10
Identities = 33/84 (39%), Positives = 48/84 (57%)
Frame = +3
Query: 3 YRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGH 182
Y DFYC W+ R+P +AR V TT+ + GF S IL S++ +A+ A G+
Sbjct: 1033 YVDFYCFWSRRIPQNVARVLDVPTTSTEMGFARYSQQFPFSGKILISARDSAKSLADCGY 1092
Query: 183 RALTFCSSQGSTFQAPAQIFVDSN 254
A+T SSQGST PA + +D++
Sbjct: 1093 HAVTIASSQGSTIAGPAYVHLDNH 1116
Score = 47.2 bits (107), Expect = 4e-04
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +2
Query: 278 TLVATTRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPI 457
+LVA TRS+SG++FTG+ LF A+L D+ + + F+ L +T P
Sbjct: 1125 SLVAITRSKSGIVFTGDKAAADGTSSANLLFSAVLLDRRLSVRSLFSALLPCCPFVTEPP 1184
Query: 458 KERKTILRGGSY 493
R +LRG Y
Sbjct: 1185 TSRAVLLRGAGY 1196
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 64.5 bits (150), Expect = 2e-09
Identities = 32/85 (37%), Positives = 45/85 (52%)
Frame = +3
Query: 9 DFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRA 188
D+YC+W++R+P +A+ F + NP EGFI + S L +S + G A
Sbjct: 998 DYYCYWSYRVPKCVAKLFSLPCFNPSEGFIKTTLDFFPSANNLVNSHSVVHISEACGWNA 1057
Query: 189 LTFCSSQGSTFQAPAQIFVDSNWLL 263
+T SSQG TF PA I +D N L
Sbjct: 1058 VTISSSQGCTFSDPAFIHLDRNTAL 1082
Score = 48.8 bits (111), Expect = 1e-04
Identities = 25/72 (34%), Positives = 39/72 (54%)
Frame = +2
Query: 272 SATLVATTRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITS 451
S LVA TRSRSGV F G+ S G++ +F + QP + + F + + +IT+
Sbjct: 1086 SNCLVALTRSRSGVYFKGDFTFLSSLSGSSRMFSLAYSGQPIHLPDFFPEIVFQLNMITA 1145
Query: 452 PIKERKTILRGG 487
P+ +R + R G
Sbjct: 1146 PLTKRSSSFRSG 1157
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 63.7 bits (148), Expect = 4e-09
Identities = 31/84 (36%), Positives = 45/84 (53%)
Frame = +3
Query: 3 YRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGH 182
Y D+YC W++R+P +A FF V + NP GF + +LT+SQ + G+
Sbjct: 1051 YLDYYCLWSYRVPQDVAAFFQVQSHNPALGFARLSKQFPTTGRVLTNSQNSMLTMTQCGY 1110
Query: 183 RALTFCSSQGSTFQAPAQIFVDSN 254
A+T SSQGST+ I +D N
Sbjct: 1111 SAVTIASSQGSTYSGATHIHLDRN 1134
Score = 40.3 bits (90), Expect = 0.043
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = +2
Query: 272 SATLVATTRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITS 451
S +LVA TRSR+GV F+G+ L P + +F A + + F L+ S
Sbjct: 1141 SNSLVALTRSRTGVFFSGDPALLNGGPNSNLMFSAFFQGKSRHIRAWFPTLFPTATLLFS 1200
Query: 452 PIKERKTILRG 484
P+++R L G
Sbjct: 1201 PLRQRHNRLTG 1211
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 55.6 bits (128), Expect = 1e-06
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 4/173 (2%)
Frame = +3
Query: 3 YRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGH 182
Y D YC W+HR+P ++A FGV N EGF+ + + LT++ TA GH
Sbjct: 1087 YIDCYCFWSHRIPKQIASLFGVVCHNTNEGFVRALTSHPPNSKNLTNATNTALSLQQMGH 1146
Query: 183 RALTFCSSQGSTFQAPAQIFVDSNW-LLSTFXXXXXXXXXXXXESFLRETIDCSNQ-GLV 356
A+T S++ TF I +D + LLS F+ SN G
Sbjct: 1147 HAITI-SARRVTFTEAHTILLDRHTNLLSPNNCLVALTRSRTGVYFVGNLHLASNSFGTN 1205
Query: 357 RRHSLRLCSMT-NPSTSSTHLQMNL-EAWNSLHHRSKNERPFFVAGLMTFQPT 509
S LC T + + H+ +L + + + RS FV+G + F+PT
Sbjct: 1206 YMFSQALCQGTIDLNNVFPHIMPHLPKMYEPIRSRSNR----FVSGSLNFRPT 1254
>UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic
virus|Rep: Replicase - White ash mosaic virus
Length = 954
Score = 43.2 bits (97), Expect = 0.006
Identities = 25/81 (30%), Positives = 33/81 (40%)
Frame = +3
Query: 3 YRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGH 182
Y D+Y + THR P R A GV G + + P+L S + A GH
Sbjct: 535 YSDYYINATHRQPKRFANALGVHAERDFGGHVKETSLIPQGEPVLVPSHKEMTTLADLGH 594
Query: 183 RALTFCSSQGSTFQAPAQIFV 245
+ T+ QG T P FV
Sbjct: 595 KVYTYSGCQGLT--VPRATFV 613
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 43.2 bits (97), Expect = 0.006
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +3
Query: 9 DFYCHWTHRLPLRLARFFGVSTTNPQEGF----IGRRDNPHKSYPILTSSQQTARVCAGT 176
D YC WT+R+P +A F V + N EG + D+ + L +S TA
Sbjct: 1126 DHYCWWTYRVPSHIADLFSVPSFNRSEGHYQMAVRTADSYTPGHFNLVNSVATANAVIQL 1185
Query: 177 GHRALTFCSSQGSTFQAPAQIFVDSN 254
G A T +SQG T I +D +
Sbjct: 1186 GFPATTISASQGVTHHNRVTILLDKH 1211
Score = 39.9 bits (89), Expect = 0.056
Identities = 24/71 (33%), Positives = 33/71 (46%)
Frame = +2
Query: 272 SATLVATTRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITS 451
S TLVA TRS GV F G+ ++ +F + QP N ++F + L+
Sbjct: 1218 SNTLVALTRSTVGVEFLGDIGSLSGTNNSSDMFSRAIYRQPINLSSSFPRIFHLLPLLNK 1277
Query: 452 PIKERKTILRG 484
PI R T L G
Sbjct: 1278 PISRRSTRLIG 1288
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|Rep:
Replicase protein - Nerine virus X
Length = 1504
Score = 41.5 bits (93), Expect = 0.019
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +3
Query: 12 FYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAG-TGHRA 188
+Y + THR P LA G+ + P I P +PIL+ S + C G GH A
Sbjct: 917 YYLNATHRNPRNLANALGIYSEAPGRTTITMSSRPMTGWPILSPS-CAKKTCFGEMGHVA 975
Query: 189 LTFCSSQGSTFQAP-AQIFVDSNWLLST 269
T+ QG T AP Q+ +D+N L T
Sbjct: 976 HTYAGCQGLT--APKIQMVLDNNTPLCT 1001
>UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root|Rep:
RNA-dependent RNA polymerase - Tulip virus X
Length = 1361
Score = 38.3 bits (85), Expect = 0.17
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 12 FYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRAL 191
+Y + THR LA GV ++NP + P +L S A GH+
Sbjct: 765 YYINATHRNVKELANKLGVYSSNPSPLHVSYGFRPEPGLHLLVPSLVKKAAFADAGHKVS 824
Query: 192 TFCSSQGSTFQAP-AQIFVDSN 254
T+ QG T AP QI +DS+
Sbjct: 825 TYAGCQGIT--APKVQILLDSD 844
>UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep:
Replicase - Garlic virus A
Length = 1625
Score = 35.9 bits (79), Expect = 0.92
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +3
Query: 3 YRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGH 182
Y D+Y + THR P RLA V G + R D +L + ++ + G
Sbjct: 954 YTDYYINATHRQPKRLANPIKVHAERLIGGSVRRSDLVPDRAMVLVPAFRSQSLLTDLGR 1013
Query: 183 RALTFCSSQGST 218
+A+T+ QG T
Sbjct: 1014 QAMTYAGCQGLT 1025
>UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (150 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Strawberry mild yellow edge-associated virus (SMYEaV)
Length = 1323
Score = 35.9 bits (79), Expect = 0.92
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 YRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGH 182
Y FY + THR RLA GV + + + + +P+L A A G
Sbjct: 728 YCRFYVNATHRNVKRLANALGVYGERDEPLKVTCSSHVYDGWPVLAPGLLKAGNLAECGR 787
Query: 183 RALTFCSSQGSTFQAP-AQIFVDSN 254
RA T+ QG T AP QI +D++
Sbjct: 788 RAFTYAGCQGLT--APRVQILLDND 810
>UniRef50_Q9VXE6 Cluster: CG4453-PA; n=14; melanogaster
subgroup|Rep: CG4453-PA - Drosophila melanogaster (Fruit
fly)
Length = 1905
Score = 35.1 bits (77), Expect = 1.6
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Frame = +2
Query: 221 PGSCPNLRRLQLASVHVSATLVATTRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQP-F 397
P + PN+RRL L S +A L A T S S ++ G + R L+ + +P +
Sbjct: 251 PVNLPNMRRLPLLSSTPAAPLAAATSSSSSQMYKGVSHIAPHRRNHLNLYGSQRQREPAY 310
Query: 398 NFLNTFANELGGMELITSPIKERKTILRGGSYDFSAY 508
NF G + I+ I GGS ++Y
Sbjct: 311 NFFTGNEAAEGSTGDLPHSIRRSLNIPFGGSSTATSY 347
>UniRef50_Q2W8H3 Cluster: Response regulator; n=2;
Magnetospirillum|Rep: Response regulator -
Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)
Length = 387
Score = 34.7 bits (76), Expect = 2.1
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -1
Query: 462 SLIGDVMSSMPPSSFANVLRKLKGWSLSIASKSG 361
+L+ DV+S + P SF LR L+GWSL +A+ G
Sbjct: 144 ALMNDVLSMVAPESFQRSLR-LRGWSLQLAASMG 176
>UniRef50_P55111 Cluster: Zinc metalloproteinase precursor; n=2;
Renibacterium salmoninarum|Rep: Zinc metalloproteinase
precursor - Renibacterium salmoninarum
Length = 548
Score = 34.7 bits (76), Expect = 2.1
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +2
Query: 236 NLRRLQLASVHVSATLVATTRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTF 415
N+ ++ S SA + + +++ I G LF S PG+ + LND N++ F
Sbjct: 50 NVEQITFKSAIKSAPMSSARSAQTSAIIPGLKNLFVSAPGS----DFSLNDSSNNYIKRF 105
Query: 416 ANELGGMELITSPIKE 463
+ G+ ++ S I E
Sbjct: 106 TQNIAGIPVLGSSITE 121
>UniRef50_Q3Y0B0 Cluster: Putative uncharacterized protein
precursor; n=1; Enterococcus faecium DO|Rep: Putative
uncharacterized protein precursor - Enterococcus faecium
DO
Length = 207
Score = 34.3 bits (75), Expect = 2.8
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -3
Query: 427 KFICKCVEEVEGLVIEHSLKEWRRTRP*LEQSMVSRKNDSRTGTSCGDESS 275
K I E+V+ V+ L EW++T ++++ VS + + TGTS D S
Sbjct: 128 KVITAYSEKVDKKVVADRLAEWKKTNEQVKKTTVSSQKNESTGTSPSDSGS 178
>UniRef50_A7H6H7 Cluster: Putative uncharacterized protein
precursor; n=1; Anaeromyxobacter sp. Fw109-5|Rep:
Putative uncharacterized protein precursor -
Anaeromyxobacter sp. Fw109-5
Length = 868
Score = 34.3 bits (75), Expect = 2.8
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +3
Query: 366 SLRLCSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMTFQPTKLPKKTSPDDQF 545
+L L NP ++ +S +RPFF G+ FQP LP + SP F
Sbjct: 274 ALSLQGTVNPDFGQVEADEIIQNLSSFEIFFPEKRPFFTQGMDLFQPVALPGRRSPQQLF 333
>UniRef50_UPI000065EB6B Cluster: pleckstrin homology domain
containing, family A member 2; n=1; Takifugu
rubripes|Rep: pleckstrin homology domain containing,
family A member 2 - Takifugu rubripes
Length = 1024
Score = 33.5 bits (73), Expect = 4.9
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 68 FDYEPSRRFYRTSRQSTQILSYINIKSADGASLCRYRPSSAHFLLLS 208
+ + S+ + RQST + SY+ ++ G S R RP SA L LS
Sbjct: 774 YQHLQSKASFSEERQSTSVSSYVTLRRGPGNSASRERPHSALDLQLS 820
>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus
X|Rep: 158kDa replicase - Botrytis virus X
Length = 1413
Score = 33.5 bits (73), Expect = 4.9
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = +3
Query: 12 FYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRAL 191
+Y + THR P RLA G ++ G + D +L S+ RA+
Sbjct: 769 YYINATHRQPRRLANVLGTHSSKTSGGAVLEADMIPDDATVLVPSRVEQAKLIDLNRRAM 828
Query: 192 TFCSSQGST 218
T+ QG T
Sbjct: 829 TYAGCQGLT 837
>UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|Rep:
ORF 1 - Chenopodium mosaic virus X
Length = 1571
Score = 33.5 bits (73), Expect = 4.9
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 YRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSY--PILTSSQQTARVCAGT 176
Y +FY + +HR +LA GV + + + + K+ PIL S A
Sbjct: 951 YCEFYVNASHRNVKQLANKLGVYSEREGKLKVNFASHHLKASRTPILVPSTMKRNAMADM 1010
Query: 177 GHRALTFCSSQGSTFQAP-AQIFVDSN 254
GH ++T+ QG T AP QI +D++
Sbjct: 1011 GHHSMTYAGCQGLT--APKVQILLDNH 1035
>UniRef50_UPI000023CEE9 Cluster: hypothetical protein FG02807.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG02807.1 - Gibberella zeae PH-1
Length = 650
Score = 33.1 bits (72), Expect = 6.5
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -3
Query: 301 GTSCGDESS--RNVDRSQLESTKIWAGAW--KVEP*EEQKVSARWPV 173
GT C ++ R +L+ TK+W G W K E E+++S W +
Sbjct: 390 GTDCNQTQMLIHSIQRLELDDTKVWMGVWLDKNETTNERQMSQMWDI 436
>UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotiorum
debilitation-associated RNA virus|Rep: Polyprotein -
Sclerotinia sclerotiorum debilitation-associated RNA
virus
Length = 1700
Score = 33.1 bits (72), Expect = 6.5
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = +3
Query: 12 FYCHWTHRLPLRLARFFG-VSTTNPQEG--FIGRRDNPHKSYPILTSSQQTARVCAGT-G 179
FY +WT R+ +A G VS P+ G + K +L S T +V T
Sbjct: 989 FYLNWTWRMTRPVANALGHVSWKLPESGKPILSVSSEVPKDCVVLAPST-TLKVGVETVN 1047
Query: 180 HRALTFCSSQGSTFQAPAQIFVDSN 254
+A T+ S+QG+TF A I +D N
Sbjct: 1048 DKAFTYTSAQGATFDKVA-ILIDDN 1071
>UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pepino
mosaic virus|Rep: RNA-directed RNA polymerase - Pepino
mosaic virus
Length = 1439
Score = 33.1 bits (72), Expect = 6.5
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 YRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKS--YPILTSSQQTARVCAGT 176
Y FY + THR LA GV + I N + PIL S+
Sbjct: 834 YCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASNALQKCKVPILVPSKMKKGAMQDI 893
Query: 177 GHRALTFCSSQGSTFQAP-AQIFVDSN 254
GH+A+T+ QG T AP QI +D++
Sbjct: 894 GHKAMTYAGCQGLT--APRVQILLDNH 918
>UniRef50_Q7XRK7 Cluster: OSJNBa0027P08.23 protein; n=3; Oryza
sativa|Rep: OSJNBa0027P08.23 protein - Oryza sativa
subsp. japonica (Rice)
Length = 272
Score = 33.1 bits (72), Expect = 6.5
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 152 DGASLCRYRPSSAHFLLLSRFNFPGSCPNLRRLQLASVHVS 274
D S+CR + F+ L ++ G PNLR+L+L VHV+
Sbjct: 102 DSGSICRLQHLQFSFISLQPPSWFGGFPNLRKLELNLVHVT 142
>UniRef50_UPI0000E483F4 Cluster: PREDICTED: similar to KIAA1875
protein; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to KIAA1875 protein -
Strongylocentrotus purpuratus
Length = 1827
Score = 32.7 bits (71), Expect = 8.6
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +3
Query: 81 PQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNWL 260
P I +PH +L + QQ + AG GH +++C G+ P ++ DS +
Sbjct: 135 PSFELISEAKSPHPITCVLYNEQQNEVISAGHGH-IMSWCFRYGAKHLVPQKVVQDSFFA 193
Query: 261 LSTF 272
TF
Sbjct: 194 QDTF 197
>UniRef50_UPI0000DA2D46 Cluster: PREDICTED: hypothetical protein;
n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 439
Score = 32.7 bits (71), Expect = 8.6
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Frame = +3
Query: 312 SFLRETIDCSNQGLVRRHSLRLCSM------TNPSTSSTHLQMNLEAWNSLHHRSKNERP 473
+FLRE D GL+R H L + +PS +S +L + L +SL R+++E+
Sbjct: 76 AFLRENEDIEVGGLIRGHFLLILQRLLVEYGASPSGASGNLPLLLNLLSSLQLRTESEQE 135
Query: 474 F-FVAGLMTFQPTKLPKKTSPDD 539
+A + Q +KL K SP D
Sbjct: 136 LDSMAMKLLHQVSKLCGKCSPAD 158
>UniRef50_Q9ATY4 Cluster: MAP kinase phosphatase; n=7; Poaceae|Rep:
MAP kinase phosphatase - Zea mays (Maize)
Length = 661
Score = 32.7 bits (71), Expect = 8.6
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = +2
Query: 320 TGNHRLFQSRPGTAPLFEAML--NDQPFN-FLNTFANELGGMELITSPIKERKTILRGGS 490
TG+ F P ++ L A++ + P + N A++ GME I SP K R G
Sbjct: 417 TGSPPSFGLSPASSNLTHALVPSSRSPLSQSSNEGASKPSGMESIHSPSKTSSIAERRGG 476
Query: 491 YDFSAYEATKKDITG*PILNSIQLIPGAPRS 583
+ + +KD+ P + SI L P AP S
Sbjct: 477 FTLLKLPSLQKDLVLPPRVPSIVLPPRAPSS 507
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 723,259,659
Number of Sequences: 1657284
Number of extensions: 15504378
Number of successful extensions: 42890
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 41410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42876
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -