Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060502.seq
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 27 1.9
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 27 2.5
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 4.4
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 4.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 4.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 4.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 4.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 4.4
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 4.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 4.4
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 4.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 4.4
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 4.4
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos... 26 5.8
SPBC4B4.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.7
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 180 HRALTFCSSQGSTFQAPAQIFVDSNW 257
H L C QGS + P +F+D +W
Sbjct: 133 HLYLLNCHEQGSLIEEPRPLFLDPSW 158
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 431 GMELITSPIKERKTILRGGSYDF-SAYEATKKDIT 532
G LIT+PIK K +G F + YE +KD++
Sbjct: 304 GFTLITNPIKSLKEFYKGVRDGFKTQYEQLQKDVS 338
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 369 LRLCSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMT--FQPTKLPKKTSPDDQ 542
LR T+P+T H+ + +++N+ H + PF + + P +LP + D+
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDE 1155
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 369 LRLCSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMT--FQPTKLPKKTSPDDQ 542
LR T+P+T H+ + +++N+ H + PF + + P +LP + D+
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDE 1155
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 369 LRLCSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMT--FQPTKLPKKTSPDDQ 542
LR T+P+T H+ + +++N+ H + PF + + P +LP + D+
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDE 1155
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 369 LRLCSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMT--FQPTKLPKKTSPDDQ 542
LR T+P+T H+ + +++N+ H + PF + + P +LP + D+
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDE 1155
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 369 LRLCSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMT--FQPTKLPKKTSPDDQ 542
LR T+P+T H+ + +++N+ H + PF + + P +LP + D+
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDE 1155
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 369 LRLCSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMT--FQPTKLPKKTSPDDQ 542
LR T+P+T H+ + +++N+ H + PF + + P +LP + D+
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDE 1155
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 369 LRLCSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMT--FQPTKLPKKTSPDDQ 542
LR T+P+T H+ + +++N+ H + PF + + P +LP + D+
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDE 1155
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 369 LRLCSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMT--FQPTKLPKKTSPDDQ 542
LR T+P+T H+ + +++N+ H + PF + + P +LP + D+
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDE 1155
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 369 LRLCSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMT--FQPTKLPKKTSPDDQ 542
LR T+P+T H+ + +++N+ H + PF + + P +LP + D+
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDE 1155
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 369 LRLCSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMT--FQPTKLPKKTSPDDQ 542
LR T+P+T H+ + +++N+ H + PF + + P +LP + D+
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDE 1155
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 369 LRLCSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMT--FQPTKLPKKTSPDDQ 542
LR T+P+T H+ + +++N+ H + PF + + P +LP + D+
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDE 1155
>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 37 FLFA*LDSSAFRLRTLKKVLSDVETIHTNLILY*HQVSRR 156
FL+ L ++ F LR+LK + T+ N + HQ SRR
Sbjct: 235 FLYMYLATAFFLLRSLKYAVLPESTMAINATITSHQRSRR 274
>SPBC4B4.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 262 RSQLESTKIWAGAWKVEP*EE 200
R ++E+ IWAG W+ +P E
Sbjct: 38 REKIEAKLIWAGEWEWKPVNE 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,255
Number of Sequences: 5004
Number of extensions: 63705
Number of successful extensions: 190
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -