Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060502.seq
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0028 - 22243272-22243577,22244564-22244713,22244919-222456...    33   0.21 
05_01_0217 + 1630083-1630205,1630467-1630710,1631695-1632508,163...    31   0.64 
11_06_0092 + 19973364-19975983,19976272-19976648                       30   1.5  
05_05_0200 - 23171803-23171906,23172304-23173951                       29   3.4  
01_01_0189 - 1640581-1640832,1640936-1641132,1641243-1641608,164...    29   3.4  
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677...    29   4.5  
12_02_0469 - 19424703-19424906,19425073-19425142,19425409-194263...    28   6.0  
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492...    28   6.0  

>04_04_0028 -
           22243272-22243577,22244564-22244713,22244919-22245656,
           22247233-22247331,22247541-22247933,22248806-22248961
          Length = 613

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 152 DGASLCRYRPSSAHFLLLSRFNFPGSCPNLRRLQLASVHVS 274
           D  S+CR +     F+ L   ++ G  PNLR+L+L  VHV+
Sbjct: 345 DSGSICRLQHLQFSFISLQPPSWFGGFPNLRKLELNLVHVT 385


>05_01_0217 +
           1630083-1630205,1630467-1630710,1631695-1632508,
           1632775-1632844,1633007-1633239,1633345-1633564
          Length = 567

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 682 SSXGMPEXWRSKSSXRKLLCQRCH*PGSGLARC 584
           ++ G P   +     R  LC RCH PG  + RC
Sbjct: 355 ATKGAPRRMKGWDEHRPRLCSRCHQPGHDIRRC 387


>11_06_0092 + 19973364-19975983,19976272-19976648
          Length = 998

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 462 SLIGDVMSSMPPSSFANVLRKLKGWSLSIASKSGAVPGLDWN 337
           +L  + +S   PSSF   LR+L   SL+  + SGA+P   WN
Sbjct: 180 ALAENTLSGSIPSSFGQ-LRRLSFLSLAFNNLSGAIPDPIWN 220


>05_05_0200 - 23171803-23171906,23172304-23173951
          Length = 583

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 384 MTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMTF 500
           +T P+TS T L+       S   R    RP +V GLM F
Sbjct: 294 LTRPATSRTSLEKRYSFIQSEERRFVESRPEWVGGLMDF 332


>01_01_0189 -
           1640581-1640832,1640936-1641132,1641243-1641608,
           1641826-1642224,1642313-1642719,1642814-1642941
          Length = 582

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 309 PERERVVATRVAETWTEANWSRRRFGQEPGKL 214
           PE ERV   ++  TW   NW+   F +  G +
Sbjct: 347 PELERVYVAQICLTWEALNWNYASFRRHAGDI 378


>02_05_0146 -
           26267245-26267339,26267427-26267469,26267589-26267725,
           26268172-26268299,26268419-26268495,26268593-26268679,
           26268817-26268933,26269115-26269165,26269383-26269497,
           26270033-26270292
          Length = 369

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 159 RVCAGTGHRALTFCSSQGS-TFQAPAQIFVDSNWLLST 269
           + C GTG+ A   CSS G+     P   F D +  LST
Sbjct: 273 KYCLGTGYLACARCSSTGTLVLTEPVSTFSDGDQPLST 310


>12_02_0469 -
           19424703-19424906,19425073-19425142,19425409-19426302,
           19426975-19427124,19427382-19427572,19427713-19427835
          Length = 543

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 682 SSXGMPEXWRSKSSXRKLLCQRCH*PGSGLARC 584
           ++ G P   +     R  LC RC  PG  + RC
Sbjct: 414 ATKGAPRSMKGWDEHRPRLCSRCRQPGHDIRRC 446


>05_07_0093 - 27648656-27648736,27649034-27649147,27649229-27649288,
            27649464-27649687,27649799-27649886,27650326-27650532,
            27650566-27650784,27650903-27651001,27651439-27651504,
            27651654-27651737,27651829-27651888,27652041-27652325,
            27652789-27652836,27652988-27653034,27653442-27653556,
            27653958-27654032,27654227-27654298,27654944-27656124,
            27656613-27656757
          Length = 1089

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -1

Query: 480  RRMVFRSLIGDVMSSMPPSSFANVLRKLKGWSLSIASKSGAVPGLDWNNRWFPVKMTPER 301
            RRM   S +   + SM PS+F + LR+  G   S  S+  ++  +  +     VKMT + 
Sbjct: 967  RRMSAESNMSYYLRSMTPSAFESALRQKDGELASYTSRLASLESIRNSLAEELVKMTEQC 1026

Query: 300  ERV 292
            E++
Sbjct: 1027 EKL 1029


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,654,553
Number of Sequences: 37544
Number of extensions: 438452
Number of successful extensions: 1247
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)