Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060502.seq
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)                30   1.5  
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             29   2.7  
SB_46417| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_29977| Best HMM Match : IL8 (HMM E-Value=1)                         28   6.1  
SB_25232| Best HMM Match : RVT_1 (HMM E-Value=4.5e-09)                 28   6.1  
SB_19411| Best HMM Match : RVT_1 (HMM E-Value=1.1e-32)                 28   6.1  

>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
          Length = 493

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
 Frame = +1

Query: 139 HQVSRRRESVPVQAIERSLFAPLKVQLSRLLPKSSS----TPIGFCPRFCYSRRHNSFP 303
           H   R   S+P       L AP  +  S L P ++S    TP  F PR   SRR +  P
Sbjct: 195 HTTGRASHSIPRDEFGVPLEAPSPLSFSTLSPLATSSPRRTPPSFTPRSSISRRRSDTP 253


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 366  SGAVPGLDWNNRWFPVKMTPERERVVATRVAETWTEANWS 247
            S  V G+DW  +W     TP  E +V + +   W E +W+
Sbjct: 1255 SRVVRGMDW--KWKDQDGTPPGEGMVTSELHNGWVEVSWN 1292


>SB_46417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/39 (25%), Positives = 24/39 (61%)
 Frame = +2

Query: 353 GTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERK 469
           GT P   A LND+ F +++    ++G ++ ++ P++ ++
Sbjct: 21  GTGPRAIAELNDRAFAWVSQAQRDIGSLDALSQPLESQE 59


>SB_29977| Best HMM Match : IL8 (HMM E-Value=1)
          Length = 521

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 453 GDVMSSMPPSSFANVLRKLKGWSLSIASKS 364
           G+V  S PP+S + V + ++GW+L    K+
Sbjct: 400 GNVAESAPPTSSSPVCQAVQGWALKTTHKA 429


>SB_25232| Best HMM Match : RVT_1 (HMM E-Value=4.5e-09)
          Length = 160

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -1

Query: 348 LDWNNRWFPVKMTPERERVVATRVAETWTEANWSRRRFGQEPGKLNLERSKK*ALDGL 175
           +D  N ++ V++  + E    T     W+   W+R  FG  P     +R    AL GL
Sbjct: 50  IDAKNGFWHVQL--DEESSYLTTFGTPWSRYRWTRMPFGISPASEKFQRRLDNALQGL 105


>SB_19411| Best HMM Match : RVT_1 (HMM E-Value=1.1e-32)
          Length = 541

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -1

Query: 348 LDWNNRWFPVKMTPERERVVATRVAETWTEANWSRRRFGQEPGKLNLERSKK*ALDGL 175
           +D  N ++ V++  + E    T     W+   W+R  FG  P     +R    AL GL
Sbjct: 235 IDAKNGFWHVQL--DEESSYLTTFGTPWSRYRWTRMPFGISPASEKFQRRLDNALQGL 290


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,217,383
Number of Sequences: 59808
Number of extensions: 504778
Number of successful extensions: 1307
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)