Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060502.seq
         (684 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   6.8  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   6.8  
AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical prot...    23   6.8  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          23   9.0  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    23   9.0  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 207 QGSTFQAPAQIFVDSNWLLSTF 272
           +GST QAP  IF D + LL+ F
Sbjct: 868 KGST-QAPTNIFTDIDKLLNAF 888


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 96  IGRRDNPHKSYPILTSSQQTARVCAGT 176
           +G RD PH S    ++S ++ R   G+
Sbjct: 479 LGNRDEPHSSSGNWSASSESGRTSIGS 505


>AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical protein
           protein.
          Length = 765

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 96  IGRRDNPHKSYPILTSSQQTARVCAGT 176
           +G RD PH S    ++S ++ R   G+
Sbjct: 480 LGNRDEPHSSSGNWSASSESGRTSIGS 506


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 482 GGSYDFSAYEATKKDITG 535
           GG YD   Y  T+KD  G
Sbjct: 604 GGGYDRDDYRRTEKDYRG 621


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 372  RLCSMTNPSTSSTHLQMNLEAWNSLHHRSK 461
            RL    NP T  TH+  + + W+++   +K
Sbjct: 986  RLMDGVNPDTLLTHMLQSQQNWSNVCEAAK 1015


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,738
Number of Sequences: 2352
Number of extensions: 14624
Number of successful extensions: 243
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)