Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060502.seq
         (684 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK025561-1|BAB15170.1|  665|Homo sapiens protein ( Homo sapiens ...    32   1.7  
BC063578-1|AAH63578.1|  584|Homo sapiens SRCAP protein protein.        31   3.8  
AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens ...    31   3.8  
AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein.             31   3.8  
AK092650-1|BAC03936.1|  577|Homo sapiens protein ( Homo sapiens ...    30   6.7  

>AK025561-1|BAB15170.1|  665|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21908 fis, clone HEP03830. ).
          Length = 665

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 20/80 (25%), Positives = 37/80 (46%)
 Frame = +2

Query: 311 VIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGGS 490
           ++  G++    +R GTA  F   LN+   +F      E G  + +T   K +K ++  G 
Sbjct: 343 ILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKKELIEKGH 402

Query: 491 YDFSAYEATKKDITG*PILN 550
           +D    ++T++     PI N
Sbjct: 403 WDDVFLDSTQRQNVVKPIDN 422


>BC063578-1|AAH63578.1|  584|Homo sapiens SRCAP protein protein.
          Length = 584

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -1

Query: 432 PPSSFANVLRKLKGWSLSIASKSGAVPGLDWNNRWFPVKMTPERERVVATRVAETWTEAN 253
           PP         L+G+SLS A+   A  G  W      +    + E  + TR+AE   E  
Sbjct: 60  PPGPPDGATVPLEGFSLSQAADL-ANKGPKWEKSHAEIAEQAKHEAEIETRIAELRKEGF 118

Query: 252 WSRRRFGQEP 223
           WS +R  + P
Sbjct: 119 WSLKRLPKVP 128


>AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46149 fis, clone TESTI4000621, moderately
           similar to Homo sapiens Snf2-related CBP activator
           protein (SRCAP). ).
          Length = 2427

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -1

Query: 432 PPSSFANVLRKLKGWSLSIASKSGAVPGLDWNNRWFPVKMTPERERVVATRVAETWTEAN 253
           PP         L+G+SLS A+   A  G  W      +    + E  + TR+AE   E  
Sbjct: 60  PPGPPDGATVPLEGFSLSQAADL-ANKGPKWEKSHAEIAEQAKHEAEIETRIAELRKEGF 118

Query: 252 WSRRRFGQEP 223
           WS +R  + P
Sbjct: 119 WSLKRLPKVP 128


>AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein.
          Length = 3053

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -1

Query: 432 PPSSFANVLRKLKGWSLSIASKSGAVPGLDWNNRWFPVKMTPERERVVATRVAETWTEAN 253
           PP         L+G+SLS A+   A  G  W      +    + E  + TR+AE   E  
Sbjct: 41  PPGPPDGATVPLEGFSLSQAADL-ANKGPKWEKSHAEIAEQAKHEAEIETRIAELRKEGF 99

Query: 252 WSRRRFGQEP 223
           WS +R  + P
Sbjct: 100 WSLKRLPKVP 109


>AK092650-1|BAC03936.1|  577|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35331 fis, clone PROST2014659. ).
          Length = 577

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = +2

Query: 146 SADGASLCRYRPSSAHFLLLSR--FNFPGSCPNLRRLQLASVHVSATLVATTRSRSGVIF 319
           SA  +S  R  P     LL+S    + P   P LRR+ L S   S++   TT     ++ 
Sbjct: 280 SARCSSAPRDAPPLHRMLLVSAGCSSSPPDAPRLRRMLLLSAGCSSSPPDTTPPLHQILL 339

Query: 320 TGNHRLFQSRPGTAPLFEAML 382
             + R + S P T P    ML
Sbjct: 340 LLSARYYSSPPDTTPPLRQML 360


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,084,027
Number of Sequences: 237096
Number of extensions: 2289720
Number of successful extensions: 5231
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5231
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)