Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060502.seq
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25598-6|AAA27939.2|  886|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protei...    28   7.1  
AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal chem...    28   7.1  
Z54327-6|CAA91120.1|  425|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>L25598-6|AAA27939.2|  886|Caenorhabditis elegans Hypothetical
           protein C06G4.1 protein.
          Length = 886

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 215 NFPGSCPNLRRLQLASVHVSATLVATTRSRSGVIFTGNHRLFQSR-PGTAPLFEAMLNDQ 391
           NFP    ++ R       V  +L + +  RSG+I   + RL   R  G  P+F   +N+Q
Sbjct: 232 NFPAKSASIDR------RVDDSLSSNSYLRSGMIMASSERLEDPRFSGRLPVFARQINNQ 285

Query: 392 PFNFLNTFANEL 427
             N  N + N +
Sbjct: 286 EINNDNFYQNSI 297


>AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protein
           protein.
          Length = 917

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +3

Query: 378 CSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMTF--QPTKLPKKTSPDDQF*I 551
           C+MTNP  S ++L   L    S    S N+ P F      F      LP     + +F  
Sbjct: 650 CNMTNPLFSDSYLDFCLRNSTSFLATSYNDTPIFDNKTFAFVGYTAMLPTSLKYNHRFKQ 709

Query: 552 RSSSYQGLLVLHLAKP 599
            S S++   +L + KP
Sbjct: 710 LSKSFE---MLEMTKP 722


>AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal
           chemotaxis protein 14 protein.
          Length = 917

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +3

Query: 378 CSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMTF--QPTKLPKKTSPDDQF*I 551
           C+MTNP  S ++L   L    S    S N+ P F      F      LP     + +F  
Sbjct: 650 CNMTNPLFSDSYLDFCLRNSTSFLATSYNDTPIFDNKTFAFVGYTAMLPTSLKYNHRFKQ 709

Query: 552 RSSSYQGLLVLHLAKP 599
            S S++   +L + KP
Sbjct: 710 LSKSFE---MLEMTKP 722


>Z54327-6|CAA91120.1|  425|Caenorhabditis elegans Hypothetical
           protein C26D10.2a protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -1

Query: 321 VKMTPERERVVATRVAETWTEANWSRRRFGQEPGKLNLERSKK*ALDGLYRH 166
           VKMTP++++V+    A    E     +RF Q+P ++ ++   K  L GL +H
Sbjct: 211 VKMTPQQKQVMMFS-ATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQH 261


>U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical
           protein B0495.7 protein.
          Length = 895

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 323 GNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITS 451
           G   LFQ+ PG + L +  L + P  F +  A E+    +I S
Sbjct: 253 GREILFQAGPGNSWLLQTYLENAPHPFCSVLAQEIFQSGIIPS 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,333,533
Number of Sequences: 27780
Number of extensions: 361976
Number of successful extensions: 1006
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)