Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060502.seq
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family...    28   5.0  
At5g10660.1 68418.m01234 calmodulin-binding protein-related cont...    28   6.6  
At2g26780.1 68415.m03212 expressed protein contains Pfam profile...    28   6.6  

>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
           protein
          Length = 635

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 244 STPIGFCPRFCYSRRHNSFPFWSHFYGKPS 333
           STP    P F  +    S+PF SH + +P+
Sbjct: 439 STPFSLSPAFSSNTNTGSYPFASHEWSRPT 468


>At5g10660.1 68418.m01234 calmodulin-binding protein-related
           contains weak similarity to calmodulin-binding proteins
          Length = 407

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 342 NQGLVRRHSLRL--CSMTNPSTSSTHLQMN 425
           NQ L+RR S      S+T+PSTSS H  +N
Sbjct: 78  NQKLLRRRSFDHPPSSLTSPSTSSAHRSLN 107


>At2g26780.1 68415.m03212 expressed protein contains Pfam profile
           TBP (TATA-binding protein) -interacting protein 120
           (TIP120); contains TIGRFAM profile TIGR01612:
           reticulocyte binding protein
          Length = 1866

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +3

Query: 354 VRRHSLRLCSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAG 488
           V++ +L L  + +  TSS+HL++ L+   SL  RSK E   F AG
Sbjct: 852 VQKIALSLGHICSNETSSSHLKIALDLLFSL-SRSKAEEILFAAG 895


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,611,314
Number of Sequences: 28952
Number of extensions: 347273
Number of successful extensions: 1000
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)