Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060501.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    27   2.5  
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    27   2.5  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    27   3.3  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   4.4  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    26   5.8  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   5.8  

>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 636 AVMPPMNRRRLLGGRFYHRFSFLVYG 559
           A +PP +R  L G RF  +F+ + YG
Sbjct: 291 AFLPPEHRHALAGNRFDDQFADVAYG 316


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 534 EQPRDSLSMIDLAFFDVFQTLIDVLGDL 451
           E PR S+ ++   FF V + LI + GDL
Sbjct: 84  EIPRSSIVILSKCFFPVRKDLIKIFGDL 111


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
 Frame = +1

Query: 316 DQLRAEWSRELARVEDEIATLRTVLQSKIRQ--SSDLKRKLGITVWKEITEDVNQGLKNV 489
           ++L  E S E+ R+  ++ TL T    +  Q    D K+K  I   KE+ E    G KN 
Sbjct: 130 EELTVE-SMEVVRLTRQVETLSTQYSIQRSQWVREDEKKKKEIQDLKELYEKSEHGAKNW 188

Query: 490 KESQVYHR*RIAWLLLQMAVTETPIYQKTESVIKTTA 600
           +  +   + +++ +  Q+   E    +K E +  + A
Sbjct: 189 ERERETFQNQVSQMSKQLDSLEKLCERKDEEIRSSQA 225


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 295 GLTPEQADQLRAE--WSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEI 456
           GL  E + + R+   W  E+A  +     L+ +++SK+  SSD+   L    W E+
Sbjct: 270 GLKEESSHEPRSSQHWKNEVAMKD----LLKNLIKSKLESSSDVNTPLIFDPWPEL 321


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 616 SKTSSRRSFLSQIQFFGIWVFRSRPFVRAATRF 518
           S+  S  S L       +WV R   FVR  TRF
Sbjct: 107 SRLDSSNSSLVMSVLDSVWVSRDESFVRCYTRF 139


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 622 DESKTSSRRSFLSQIQFFGIWVFRSRPFVRAATRFSIDDRL 500
           D   TSS+ S  +  +F  +W+F S         ++ D+ L
Sbjct: 440 DRDSTSSKNSTRTSFKFTPLWIFESSDLAALDIAWTADNSL 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,361
Number of Sequences: 5004
Number of extensions: 56966
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)