Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060501.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1009 + 33796450-33796824,33796926-33796970,33797069-337971... 35 0.052
06_03_0649 + 23138442-23138842,23139576-23139849,23139929-231405... 32 0.37
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 32 0.49
12_01_1028 + 10541350-10541685,10542140-10542828,10542896-10542998 30 1.5
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869... 29 2.6
01_01_1127 + 8930593-8932681,8932812-8933401 29 2.6
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773 29 3.4
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314 29 4.5
11_03_0188 - 11338013-11338976,11339843-11340183 28 6.0
09_02_0615 - 11251869-11252832,11253699-11254039 28 6.0
06_03_0490 - 21375400-21376363,21377230-21377570 28 6.0
06_02_0143 - 12266120-12267083,12267950-12268290 28 6.0
06_02_0141 + 12259098-12259438,12260305-12261268 28 6.0
02_04_0118 + 19924184-19924524,19925391-19926354 28 6.0
01_06_1102 - 34541341-34541561,34541691-34541769,34541880-345419... 28 7.9
>01_06_1009 +
33796450-33796824,33796926-33796970,33797069-33797182,
33797679-33797759,33798038-33798211,33798353-33798438,
33799157-33799901
Length = 539
Score = 35.1 bits (77), Expect = 0.052
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Frame = +1
Query: 256 GVAGDIHTPDELAGLTPEQADQLR-AEWSRELARVEDEIATLRTVLQSKIRQSSDLKRK- 429
G AGDI E +PE + +R + EL + ++ L I D++RK
Sbjct: 98 GAAGDIAASAEQPEASPEDLEDIRQVKRVLELLQKNRDMTFGEVKLTIMIEDPRDIERKR 157
Query: 430 -LGITVWKEIT-EDVNQGLKNVKESQVYHR*RIAWLLLQMAVTETP 561
LGI EIT +D+ L V E ++ R+A LL +TE P
Sbjct: 158 LLGIEDPDEITRDDLADALVEVNEGRIPEN-RVALQLLAKEMTEWP 202
>06_03_0649 +
23138442-23138842,23139576-23139849,23139929-23140562,
23140771-23140826,23141178-23141282,23141295-23141535,
23142686-23142690
Length = 571
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +1
Query: 427 KLGITVWKEITEDVNQGLKNVKESQVYHR*RIAWLLLQMAVTETPIYQKTESVIKTT 597
K G T WKE+T++ N+ N K + ++ ++ W L+ A++E Y T + + T+
Sbjct: 242 KKGDTFWKEVTDEFNK-KGNGKRRREINQLKVHWSRLKSAISEFNDYWSTVTQMHTS 297
>03_05_0754 +
27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +1
Query: 316 DQLRA---EWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKN 486
D+ RA EW + + + D+I TL L SK R + D + +L + E+ + L
Sbjct: 220 DEFRAAKKEWGSDRSMLVDQIGTLEVNLDSKTRMAEDFRSRLEMCSQALAHEEGRRKLLE 279
Query: 487 VKESQVYH 510
+ S++ H
Sbjct: 280 AEMSELKH 287
>12_01_1028 + 10541350-10541685,10542140-10542828,10542896-10542998
Length = 375
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 298 GRPTHQEYVCPLPLRA*HCFFSCLNTAHI 212
GR H + CP P H ++SC NT HI
Sbjct: 142 GREGHHQATCPNP----HLYYSCHNTGHI 166
>05_07_0116 -
27785083-27786123,27786201-27786278,27786364-27786976,
27787128-27787213,27787316-27787438,27787600-27787734,
27787930-27788019,27788796-27788981,27789560-27789661,
27789787-27789900,27790010-27790153,27790260-27790325,
27790895-27791056,27791668-27791916
Length = 1062
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +1
Query: 307 EQADQLRAEWSRELARVEDEIATLRT-VLQSKIRQSSDLKR 426
E+ D LRAE + +L+ E+EIA L T + Q++I ++ + R
Sbjct: 674 EREDALRAELASQLSEKEEEIARLNTKINQTEIHATNLISR 714
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Frame = +1
Query: 241 SNVRHGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDL 420
SN H D D + + D R +W RE AR++ EI R Q +DL
Sbjct: 101 SNAGHDDDDDDREADAVWEGIDRRMDSRRKDW-RE-ARLKQEIERYRASNPKITEQFADL 158
Query: 421 KRK---LGITVWKEITEDVNQGLKNVKE 495
KRK L W+ I E + L+ K+
Sbjct: 159 KRKLVDLSAQEWESIPEIGDYSLRRNKK 186
>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
Length = 944
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 304 PEQADQLRAEWSRELARVEDEIATLR 381
P ++DQL W R + +DE+A+L+
Sbjct: 61 PPESDQLARAWLRRVQEAQDEVASLK 86
>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
Length = 1056
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 415 PSFDGSCFAVQFSKSRFHLRHGLARDSIQRVTGL 314
PS G+C A+QF + +L HGL + ++ GL
Sbjct: 543 PSTLGNCLALQFLYLQANLLHGLIPKELNKLRGL 576
>11_03_0188 - 11338013-11338976,11339843-11340183
Length = 434
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 427 KLGITVWKEITEDVNQGLKNVKESQVYHR*RIAWLLLQMAVTE 555
K G T WKE+T++ N+ N K ++ ++ ++ W L+ ++ E
Sbjct: 211 KKGDTFWKEVTDEFNR-KGNGKRTREINQLKVHWSRLKSSIGE 252
>09_02_0615 - 11251869-11252832,11253699-11254039
Length = 434
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 427 KLGITVWKEITEDVNQGLKNVKESQVYHR*RIAWLLLQMAVTE 555
K G T WKE+T++ N+ N K ++ ++ ++ W L+ ++ E
Sbjct: 211 KKGDTFWKEVTDEFNR-KGNGKRTREINQLKVHWSRLKSSIGE 252
>06_03_0490 - 21375400-21376363,21377230-21377570
Length = 434
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 427 KLGITVWKEITEDVNQGLKNVKESQVYHR*RIAWLLLQMAVTE 555
K G T WKE+T++ N+ N K ++ ++ ++ W L+ ++ E
Sbjct: 211 KKGDTFWKEVTDEFNR-KGNGKRTREINQLKVHWSRLKSSIGE 252
>06_02_0143 - 12266120-12267083,12267950-12268290
Length = 434
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 427 KLGITVWKEITEDVNQGLKNVKESQVYHR*RIAWLLLQMAVTE 555
K G T WKE+T++ N+ N K ++ ++ ++ W L+ ++ E
Sbjct: 211 KKGDTFWKEVTDEFNR-KGNGKRTREINQLKVHWSRLKSSIGE 252
>06_02_0141 + 12259098-12259438,12260305-12261268
Length = 434
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 427 KLGITVWKEITEDVNQGLKNVKESQVYHR*RIAWLLLQMAVTE 555
K G T WKE+T++ N+ N K ++ ++ ++ W L+ ++ E
Sbjct: 211 KKGDTFWKEVTDEFNR-KGNGKRTREINQLKVHWSRLKSSIGE 252
>02_04_0118 + 19924184-19924524,19925391-19926354
Length = 434
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 427 KLGITVWKEITEDVNQGLKNVKESQVYHR*RIAWLLLQMAVTE 555
K G T WKE+T++ N+ N K ++ ++ ++ W L+ ++ E
Sbjct: 211 KKGDTFWKEVTDEFNR-KGNGKRTREINQLKVHWSRLKSSIGE 252
>01_06_1102 -
34541341-34541561,34541691-34541769,34541880-34541929,
34542291-34542576
Length = 211
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 676 LXVAHLTELAGHAGRDAADESKTSSRRSFLSQI--QFFGIWVFRSRPFVRAA 527
L V + E A A DA + + +SQ + G+W + SRPF+ AA
Sbjct: 26 LDVENDEEAAARADADADAHALEAKGDKLMSQARRELHGVWSYVSRPFIVAA 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,177,502
Number of Sequences: 37544
Number of extensions: 346428
Number of successful extensions: 987
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -