Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060501.seq
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08) 56 4e-08
SB_48386| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) 32 0.50
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0) 29 2.7
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06) 29 3.5
SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_59222| Best HMM Match : Filament (HMM E-Value=0.95) 28 8.1
SB_45298| Best HMM Match : DUF827 (HMM E-Value=0.058) 28 8.1
SB_18819| Best HMM Match : DUF822 (HMM E-Value=0.3) 28 8.1
>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
Length = 829
Score = 55.6 bits (128), Expect = 4e-08
Identities = 29/89 (32%), Positives = 49/89 (55%)
Frame = +1
Query: 346 LARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYHR*RIA 525
L +E+EI TL+ L K Q +DLKR+LGIT W +I E + V++S+ Y++
Sbjct: 73 LRHIEEEITTLKQALARKENQLADLKRELGITAWSQIKEGLGNTYHGVQQSRAYNKLSQG 132
Query: 526 WLLLQMAVTETPIYQKTESVIKTTAEKTS 612
++ + + +KT S +KT + T+
Sbjct: 133 ASATKVVLVDAS--EKTVSAVKTASSATA 159
>SB_48386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 33.1 bits (72), Expect = 0.22
Identities = 27/118 (22%), Positives = 59/118 (50%)
Frame = +1
Query: 211 KYERCSNS*RSNVRHGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVL 390
+Y + +N+ + VR ++ + + L T + A+ LR +E +DEI TLR +L
Sbjct: 496 EYAKENNALKDQVRR-MSLQLEEKENLLARTSQSAENLR----KERNAFDDEIETLRQML 550
Query: 391 QSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYHR*RIAWLLLQMAVTETPI 564
+ R++S + KL T + + + + +KE V+++ +I L ++ ++ +
Sbjct: 551 ADRTRRNSQTEDKLSGT--EACISQLKELQECLKEENVFYQEKIRELEKELEESQAEV 606
>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
Length = 1691
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 310 QADQLRAEWSRELARV-EDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKN 486
Q +QL E RE+ ++ + + LRT ++ +LK KL VW E E+ + +
Sbjct: 113 QKEQLHREKEREIIQIIKQKDDALRTAQHEWAKEREELKGKLRAEVWSEAKEEAKKDSER 172
Query: 487 VK 492
K
Sbjct: 173 EK 174
>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 805
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 310 QADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKL 432
+AD+LRAE + R+E EI L+ ++ +L++KL
Sbjct: 157 EADELRAELKSNIERLEGEIEGKNKALEEAKKRIDELEQKL 197
>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
Length = 1292
Score = 29.1 bits (62), Expect = 3.5
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Frame = +1
Query: 280 PDELAGLTPEQADQL-RAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKL-------- 432
P E GL L R E +E+EI + L+ R+++DLK KL
Sbjct: 112 PFEEGGLDSYDIANLERNELKTRNRDLEEEITAKKAALKQISRENTDLKSKLELLMKDQS 171
Query: 433 GITVWKEITEDVNQGLKNVKESQ 501
G V K++T V + +N+K Q
Sbjct: 172 GAAVIKDLTRQVEELRENLKAKQ 194
>SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1922
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/73 (27%), Positives = 38/73 (52%)
Frame = +1
Query: 256 GVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLG 435
G++GD+ L+ + + + R WSREL R D+ TL +LQ +S++K ++
Sbjct: 596 GLSGDLDNSHMLSVIERKMSADDRKVWSRELER--DKKTTLEGLLQ---WMTSEMKSRMR 650
Query: 436 ITVWKEITEDVNQ 474
T ++ + V +
Sbjct: 651 ATAAEKSMQQVRK 663
>SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1352
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Frame = +1
Query: 280 PDELAGLTPEQADQLR-------AEWSRELARVEDEIATLRTVLQSKIRQS 411
PDEL G TP A+Q+R + + L E A LRT ++S QS
Sbjct: 987 PDELKGATPSTAEQVRPVKEPDEVQVTTSLIGSSTERAKLRTEIESAYEQS 1037
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 444 VERDHRGRQSGFEKRQRKPSLSSIENRVAALTNGRDRNTHIP 569
+ER R R SG +R+R PS S R + +N R H P
Sbjct: 135 LERRSRSR-SGSRERRRSPSRSPERRRERSFSNSPKRERHSP 175
>SB_59222| Best HMM Match : Filament (HMM E-Value=0.95)
Length = 411
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/74 (21%), Positives = 35/74 (47%)
Frame = +1
Query: 274 HTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKE 453
H +E+ + Q+R + S++ + ++ L+ KIR+ +L +KL I ++
Sbjct: 281 HKLEEVTAEKEAEKQQIREDLSKKYDELRFHKDSVIAKLKDKIREKIELNKKLNIEHKEK 340
Query: 454 ITEDVNQGLKNVKE 495
+ V + K + E
Sbjct: 341 LGNTVKEHKKAINE 354
>SB_45298| Best HMM Match : DUF827 (HMM E-Value=0.058)
Length = 333
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/69 (21%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +1
Query: 298 LTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITED---V 468
+T ++ D+L+++ + L ++E+ ++ +L ++ +LKRK + +E TE+ +
Sbjct: 76 MTEKERDELKSKMNTGL---KEELMEVKNLLSKTKQERDELKRKAATGLKEEFTEELQAL 132
Query: 469 NQGLKNVKE 495
N+ ++ +K+
Sbjct: 133 NEKVEKLKD 141
>SB_18819| Best HMM Match : DUF822 (HMM E-Value=0.3)
Length = 866
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Frame = +1
Query: 298 LTPEQADQLRA---EWSRELARV--EDEIATLRT---VLQSKIRQSSDLKRKLGITVWKE 453
+TP+Q + LRA EW R V +++ +R Q + R+ ++++L ++
Sbjct: 252 MTPDQVEALRARYREWRRRRKEVMTPEQLEIIRRGNRERQRRRRERLGVRKRLASNQFRG 311
Query: 454 ITEDVNQGLKNVK 492
++ V QG+KN++
Sbjct: 312 ASDAVIQGIKNLQ 324
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,287,163
Number of Sequences: 59808
Number of extensions: 419559
Number of successful extensions: 1121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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