Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060500.seq
         (503 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   1.6  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   2.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.3  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 367 DVITVTDRSDQHWWQGXIAHRRGLFPA 447
           D+I V     +  W G   H  GL+P+
Sbjct: 200 DIINVMAYDLRGSWDGVTGHHSGLYPS 226


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 209 NLTTQRKNLLEASLNTLKCW 150
           +L  +RKN    S  TLK W
Sbjct: 83  DLAARRKNATRESTATLKAW 102


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 288 RPHRNVGAGSIRLHP 332
           + +RN+GA   R+HP
Sbjct: 753 KKNRNLGAACGRIHP 767


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 288 RPHRNVGAGSIRLHP 332
           + +RN+GA   R+HP
Sbjct: 753 KKNRNLGAACGRIHP 767


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 288 RPHRNVGAGSIRLHP 332
           + +RN+GA   R+HP
Sbjct: 753 KKNRNLGAACGRIHP 767


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 288 RPHRNVGAGSIRLHP 332
           + +RN+GA   R+HP
Sbjct: 753 KKNRNLGAACGRIHP 767


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,969
Number of Sequences: 336
Number of extensions: 1920
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)