Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060500.seq
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1169 + 28130783-28130899,28130987-28131427 30 0.92
05_05_0384 - 24557190-24557393,24557481-24557597,24557712-24558440 28 3.7
12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421... 28 4.9
05_05_0310 - 23991461-23991652,23991780-23991965,23992813-239930... 28 4.9
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023... 28 4.9
11_05_0092 + 18984571-18984621,18984717-18984779,18984957-189849... 27 6.5
11_05_0004 - 18269416-18269473,18270319-18270509,18271061-182720... 27 6.5
04_03_0319 + 14311530-14312159 27 6.5
10_08_0330 - 16816497-16819952 27 8.6
>06_03_1169 + 28130783-28130899,28130987-28131427
Length = 185
Score = 30.3 bits (65), Expect = 0.92
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +1
Query: 79 GFLIRISES-SPGDFSLSVKCPDGVQHF---KVLRDASSKFFLWVVKFNSLNEL 228
GF + S PGDF SV P+G + + KV +D++S +L FNS EL
Sbjct: 5 GFQLESGASIQPGDFIPSVSRPNGARQYMALKVFKDSASGDWLVYYGFNSDPEL 58
>05_05_0384 - 24557190-24557393,24557481-24557597,24557712-24558440
Length = 349
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = +3
Query: 174 RLEQVLPLGRQVQFAQRTSXIIIVPRLQSPSST*TARRRPHRNVGAGSIRLHPTRGXRVG 353
R E+ Q + + + PRL+ +S+ + ++ + VG G + P RG V
Sbjct: 35 RAEEETAAAEATQLSPELAAAVARPRLRRQASSSSPAKQQQQQVGGGGSKRAPQRGLGVA 94
Query: 354 V*TR*RHNRD--RSLRPALVA 410
R R D R L A+ A
Sbjct: 95 ELERLRCGGDPFRDLNAAVAA 115
>12_01_0535 +
4208410-4208661,4209529-4209627,4210125-4210265,
4210378-4210560,4210664-4210821,4210905-4211004,
4211085-4211196,4211241-4211419,4211489-4211674,
4211762-4211929
Length = 525
Score = 27.9 bits (59), Expect = 4.9
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Frame = +1
Query: 91 RISESSPGDFSLSVKCPDGVQHFKVLRDASSKFFLWVVK-----FNSLNELAXLSSYRVC 255
R+ S D S + D ++H++ RD S++ WV +EL +
Sbjct: 413 RVGHHSTSDDSTKYRPVDEIEHWRTARDPISRYRKWVQGNGWWCDEDESELRNNVRQELL 472
Query: 256 SRLQALKLRDVVPIEMLVQALYDFTPQEAXELEFRRGDVI 375
+Q + P+ L +YD P E E D I
Sbjct: 473 KAIQVAERMPKPPLAELFTDVYDEVPSNLREQERLLRDTI 512
>05_05_0310 -
23991461-23991652,23991780-23991965,23992813-23993094,
23993220-23993382,23993477-23993661,23994154-23994205,
23994292-23994392,23995244-23995417
Length = 444
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 91 RISESSPGDFSLSVKCPDGVQHFKVLRDASSKF 189
R+ E S D ++ + P GV H++++ D K+
Sbjct: 172 RVLEKSGKDHTILLVLPSGVYHYRIIVDGEPKY 204
>02_05_1276 + 35397948-35398298,35398937-35401738,35402085-35402306,
35402503-35402562,35402615-35402698,35402740-35402816,
35403147-35403363
Length = 1270
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 436 TRGGELXRPATSAGRSDLSRL*RHRV*TPTRXP 338
T GG+L RP S+GR+ +L + RV T P
Sbjct: 949 TSGGKLNRPMDSSGRNSQQQLLKPRVDAETLQP 981
>11_05_0092 +
18984571-18984621,18984717-18984779,18984957-18984998,
18985560-18985625,18985728-18985793,18986277-18986390,
18986592-18986655,18987399-18987481,18987703-18987752,
18987844-18987921,18988020-18988148,18988244-18988286,
18988987-18989073,18989217-18989318,18989556-18989663,
18989750-18989800,18989886-18989959,18990079-18990130,
18990216-18990311
Length = 472
Score = 27.5 bits (58), Expect = 6.5
Identities = 24/70 (34%), Positives = 28/70 (40%)
Frame = +1
Query: 253 CSRLQALKLRDVVPIEMLVQALYDFTPQEAXELEFRRGDVITVTDRSDQHWWQGXIAHRR 432
C R ALK P+ LV LY+ P EL G V D H G + +
Sbjct: 365 CQREFALKYLPEDPLFQLVSKLYEVVPPILTEL----GKVKNPWPNVDAH--SGVLLNHF 418
Query: 433 GLFPAXYVTV 462
GL A Y TV
Sbjct: 419 GLSEARYYTV 428
>11_05_0004 -
18269416-18269473,18270319-18270509,18271061-18272004,
18272083-18272254,18272332-18272407,18272498-18272617,
18272795-18272959,18273048-18273138,18273673-18273757,
18273873-18274043,18274151-18274207,18274290-18274385,
18275223-18275365,18275464-18275530
Length = 811
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 292 PIEMLVQALYDFTPQEAXELEFRRGDVITVTDRSD 396
P++ +YD TPQ E+RR DV V SD
Sbjct: 652 PLKSPSSVVYDGTPQTPGATEWRRPDVTEVEKCSD 686
>04_03_0319 + 14311530-14312159
Length = 209
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 114 RLLLISQMSGRCPALQSIKRRLEQVLPLGR 203
+LLLI ++GR P+L + +EQ++ LGR
Sbjct: 110 KLLLIEAINGRHPSLDGL--TIEQIISLGR 137
>10_08_0330 - 16816497-16819952
Length = 1151
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 374 MTSPRLNSNSXASCGVKSYRACTNISMGTTSR 279
+T P + SN+ CG+ +CTN ++ + R
Sbjct: 1050 LTDPSIYSNNSGLCGLPLNISCTNYALASDER 1081
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,340,721
Number of Sequences: 37544
Number of extensions: 230811
Number of successful extensions: 639
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -