Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060500.seq
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   1.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.3  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.6  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           21   9.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.6  

>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -1

Query: 395 SERSVTVMTSPRLNSNSXASCGVKSYRACTNISMGTTSRSLSA*RRLQTRYDDN 234
           +E    +  +   + N   +C  K Y   +N S+G+ SRS        +RY+D+
Sbjct: 187 TEHRTVLAVNIEKSENETKTC--KKYAISSN-SLGSRSRSFQRTSSCHSRYEDS 237


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +2

Query: 5   TSTVGIMGVLQEQMQKNS*QTNLKVAS**GSANQALATSPYQSNVRTVSSTS 160
           T+T G     Q+Q Q+   Q   + +S       + A+SP   +    SSTS
Sbjct: 788 TTTTGARQQQQQQQQQQQQQQQQQSSSDYLMVGNSPASSPRYLSAAATSSTS 839


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 182 LEASLNTLKCWTPSGHLTDKEKSPG 108
           +  S   L CWT + +  +K K  G
Sbjct: 232 ISISGTALNCWTQTENSLEKAKQVG 256


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 182 LEASLNTLKCWTPSGHLTDKEKSPG 108
           +  S   L CWT + +  +K K  G
Sbjct: 103 ISISGTALNCWTQTENSLEKAKQVG 127


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 290 TTSRSLSA*RRLQTRYDDNXASSLSELNLT 201
           TTS ++S   R   R +DN A+   +LN T
Sbjct: 606 TTSGTISEKFRKLIRIEDNVATLRMKLNPT 635


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 381 HGYDVTASKLQLAXLLW 331
           HGYD+ AS +    +L+
Sbjct: 801 HGYDIYASSIDKENILF 817


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 182 LEASLNTLKCWTPSGHLTDKEKSPG 108
           +  S   L CWT + +  +K K  G
Sbjct: 232 ISISGTALNCWTQTENSLEKAKQVG 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,226
Number of Sequences: 438
Number of extensions: 2349
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)