Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060498.seq
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993... 32 0.49
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 31 0.65
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071... 31 0.65
07_03_1670 - 28505732-28506426,28508202-28509309 30 1.5
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 29 2.6
03_06_0333 - 33204345-33204803 29 3.5
08_01_0052 + 361505-361969,362270-362348,362816-362880,363069-36... 29 4.6
12_02_1275 - 27482784-27483272 28 6.0
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 28 6.0
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171... 28 8.0
>03_06_0034 +
31197846-31198417,31198562-31198987,31199074-31199386,
31199510-31199560
Length = 453
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 262 RQSERLLPGALRDAPSPE*TFSTCLVSTESTPF 164
R S+RL+ ALR PSP F++ L +TPF
Sbjct: 37 RPSQRLVYAALRSLPSPRALFASLLSQLSATPF 69
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 31.5 bits (68), Expect = 0.65
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -1
Query: 339 SREQGHQDHHRGPAPR----HSEKHSASEADRVSVCCRERSETPRHRNKPSRPVWS 184
SR G R P+P S +H + DR S R RS PR R P R +WS
Sbjct: 305 SRRPGSPIRRRSPSPPPRRLRSPRHLSPRRDRGSPI-RRRSPLPRRRLTPPRRMWS 359
>04_03_0665 -
18506221-18506271,18506331-18506401,18507097-18507169,
18507476-18507805
Length = 174
Score = 31.5 bits (68), Expect = 0.65
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 161 WKWCGLRRDQTGREG 205
W WCGLRR + GR G
Sbjct: 65 WMWCGLRRSKAGRRG 79
>07_03_1670 - 28505732-28506426,28508202-28509309
Length = 600
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 446 LQLFGQQRRESP*WPSVSATAQLQQQVVNKILERKD 553
L+ +G+ RR P W S S +LQQQV ++ KD
Sbjct: 238 LEGYGRVRRGFPSWVSASDRRRLQQQVAADVVVAKD 273
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = -1
Query: 312 HRGPAPRHSEKHSASEADRVSVCCRERSET----PRHRNKPSRPVWSRRS 175
+R P+PRHS S +E R V R RS P HRN S PV RS
Sbjct: 493 YRRPSPRHSRSRSPAEHQRRDVRNRLRSGRDGGGPDHRNS-SPPVNRGRS 541
>03_06_0333 - 33204345-33204803
Length = 152
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +2
Query: 278 CFSLCLGAGPLWWS*CPCSRLCTARRVTGRGCEPRYPGHPQPRRQSR 418
C SL G L C C+R C R RG PR+ P Q R
Sbjct: 57 CCSLLDGLVDLDAVVCLCTRPCLLLRAQHRGARPRWAASPPAATQRR 103
>08_01_0052 +
361505-361969,362270-362348,362816-362880,363069-363236,
363731-364171
Length = 405
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 326 PCSRLCTARRVTGRGCEPRYPGHPQPRRQSRLAKCPAMVKLQLF 457
P +R+ A + EP PG Q ++Q R +C +V+ +L+
Sbjct: 316 PVARIGEAMQKQSISSEPENPGQGQGKQQRRCKECDVLVEDKLY 359
>12_02_1275 - 27482784-27483272
Length = 162
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 158 QWKWCGLRRDQTGREG 205
+W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 492 LGHHGDSRRCWPKSWSLTIAGHLASRD 412
L D + WP W ++ AGH+++ D
Sbjct: 76 LQRRADCKDTWPGQWDISSAGHISAGD 102
>05_03_0682 -
16916437-16916686,16916761-16916822,16917082-16917147,
16917606-16917737,16917925-16918026,16918146-16918343,
16918409-16918555,16918804-16918914,16919661-16920194,
16920269-16920425,16920511-16920660,16920744-16920883,
16921668-16921784,16922759-16922932,16923020-16923187,
16923323-16923464,16923610-16923728,16924997-16925098,
16925618-16925701,16926843-16927142
Length = 1084
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 279 HSASEADRVSVCCRERSETPRHRNKPSRPV 190
H EAD V+V + + RHRN PS V
Sbjct: 180 HDEDEADDVNVPAQAEENSIRHRNVPSSAV 209
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,292,780
Number of Sequences: 37544
Number of extensions: 361563
Number of successful extensions: 1180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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