Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060498.seq
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_57583| Best HMM Match : DUF572 (HMM E-Value=2.1)                    29   4.7  
SB_22739| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_22741| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -1

Query: 357  TLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRVSVCCRERSETPRHRNKPS 199
            T+  V+  E+  +D  +GP  R  + H       V    R+RS  P +R   S
Sbjct: 1092 TIALVERLEEVERDGRQGPDSRRRQTHERRGGKEVREAIRDRSSQPDYRRADS 1144


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
 Frame = -1

Query: 342 QSREQGHQD---HHRGPAP------RHSEKHSASEADRVSVCCRERSETPRHRNKPSRPV 190
           +  E+ H++   HHR  +P      R   + S S A       R RS +PR R +   P 
Sbjct: 182 EEEEEEHKESPVHHRSLSPEPRRGYRDQRRRSHSPAHHRRSRSRSRSRSPRRRRRSRSPR 241

Query: 189 WSRR----SPHH 166
             RR    SPHH
Sbjct: 242 RRRRSRSPSPHH 253



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = -1

Query: 342 QSREQGHQDHHRGPAPRHSEKHSASEADRVSVCCRERSETPRHRNKPSRPVWSRRSPHHF 163
           +SR +  +   R  +PR   +  +      S   R RS +PR R+  SR    RR     
Sbjct: 225 RSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRSPTHRRHRSRS 284

Query: 162 H 160
           H
Sbjct: 285 H 285


>SB_57583| Best HMM Match : DUF572 (HMM E-Value=2.1)
          Length = 638

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 580 DLSHREHSYTLGSCC-AQQHDVLRV 651
           D+  R+ SYT G CC  + HDV+ V
Sbjct: 493 DIQTRDSSYTSGVCCYGEDHDVIGV 517


>SB_22739| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +2

Query: 494 VSATAQLQQQVVNKILERKDKHPVKI---DFKIYLTENTVIRWEAVVHNNMMYSACPGSA 664
           +S    L  ++ +   E K++ P+K+   D  +YL++     W+ VV +        G+A
Sbjct: 65  LSVNYHLSSRLCDLNSETKERQPLKLARRDLSVYLSDRKAGDWKGVVRSCKHLRDLAGNA 124

Query: 665 VPAT 676
            P T
Sbjct: 125 DPTT 128


>SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 569

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 324 HQDHHRGPAPRHSEKHSASEADRV 253
           H  HH     RH  KH+A  A RV
Sbjct: 167 HPSHHHVTKSRHQTKHNAKHATRV 190


>SB_22741| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 497 SATAQLQQQVVNKILERKDKHPVKI---DFKIYLTENTVIRWEAVVHNNMMYSACPGSAV 667
           S    L  ++ +   E K++ P+K+   D  +YL++     W+ VV +        G+A 
Sbjct: 66  SVNYHLSSRLCDLNSETKERQPLKLARRDLSVYLSDRKAGDWKGVVRSCKHLRDLAGNAD 125

Query: 668 PAT 676
           P T
Sbjct: 126 PTT 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,746,714
Number of Sequences: 59808
Number of extensions: 406611
Number of successful extensions: 1231
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)