Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060498.seq
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p...    28   5.0  
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p...    28   5.0  
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar...    28   5.0  
At3g58190.1 68416.m06488 LOB domain protein 29 / lateral organ b...    28   6.7  
At1g79690.1 68414.m09294 MutT/nudix family protein contains Pfam...    28   6.7  
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea...    27   8.8  
At1g20310.1 68414.m02535 expressed protein                             27   8.8  
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR...    27   8.8  
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR...    27   8.8  

>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
           putative similar to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 224

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 282 KHSASEADRVSVCCRERSETPRHRNKPSRPVWSRRSPHH 166
           + +    DR +   R RS +P +R +PS     RRSP +
Sbjct: 140 REAGEREDRYAGSRRRRSPSPVYRRRPSPDYTRRRSPEY 178


>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
           putative similar to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 250

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 282 KHSASEADRVSVCCRERSETPRHRNKPSRPVWSRRSPHH 166
           + +    DR +   R RS +P +R +PS     RRSP +
Sbjct: 166 REAGEREDRYAGSRRRRSPSPVYRRRPSPDYTRRRSPEY 204


>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
           RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 1166

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -1

Query: 351 RAVQSREQGHQDHHRG---PAPRHSEKHSASEADRVSVCCRERSETPRHRNKPSR 196
           R V  +E+GH++H R       R  E+    + +R     RER E  R   +  R
Sbjct: 114 RRVNEKERGHREHERDRGKDRKRDREREERKDKEREREKDRERREREREEREKER 168


>At3g58190.1 68416.m06488 LOB domain protein 29 / lateral organ
           boundaries domain protein 29 (LBD29) identical to
           SP|Q9M2J7 LOB domain protein 29 {Arabidopsis thaliana};
           supported by full-length cDNA gi:17227167
          Length = 218

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 425 KCPAMVKLQLFGQQRRESP*WPSVSATAQLQQQVVN 532
           +C A + +    Q R + P +  VS    LQQQVVN
Sbjct: 65  RCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVN 100


>At1g79690.1 68414.m09294 MutT/nudix family protein contains Pfam
           NUDIX domain [PF00293]; very low similarity to Chain A
           and Chain B of Escherichia coli isopentenyl
           diphosphate:dimethylallyl diphosphate isomerase
           [gi:15826361] [gi:15826360]
          Length = 772

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 477 DSRRCWPKSWSLTIAGHLASRD 412
           D +  WP  W ++ AGH+++ D
Sbjct: 54  DDKDSWPGQWDISSAGHISAGD 75


>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
           family protein contains seven WD-40 G-protein beta
           repeats; similar to RA-regulated nuclear
           matrix-associated protein (GI:14161320) {Homo sapiens}
          Length = 535

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +3

Query: 90  LRLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSLCRLR 269
           L +++ T   Q+ +  SS   Y N   +  + T + +K  +   +SLS+  S+  +   R
Sbjct: 444 LEMNRETESPQKHSSLSSDDDYNNDQSMPIIRTPESQKKKTSSSSSLSSLSSEEDIICER 503

Query: 270 TPSVS 284
           TP  +
Sbjct: 504 TPETT 508


>At1g20310.1 68414.m02535 expressed protein
          Length = 240

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
 Frame = +1

Query: 427 VPCYGQAPALWPAAPRVSMMAKRLRNSSTTTTSC---EQDLGAQGQAPR*N*LQDL-SHR 594
           V C GQ     P  P     A +   ++++ +SC   E+D G+  +  R   ++   S +
Sbjct: 80  VSCIGQVKLARPKCPEKKNKAPKNLKTASSLSSCVIKEEDNGSFSKLKRIFSMRSYPSRK 139

Query: 595 EHSYTLGSCCAQQHDVLRVPGVCSS 669
            +S    +  A++H +  V  V ++
Sbjct: 140 SNSTAFAAAAAREHPIAEVDAVTAA 164


>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 339 SREQGHQDHHRGPAPRHSEKHSASEADRVSVCCRERSETPRHRNKPSRPVWSR 181
           SR  G +   R P+PR S   S S    V    +E S++P   +    P+ +R
Sbjct: 250 SRSPGPRSKSRSPSPRRSRSRSRSPLPSVQ---KEGSKSPSKPSPAKSPIHTR 299


>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 339 SREQGHQDHHRGPAPRHSEKHSASEADRVSVCCRERSETPRHRNKPSRPVWSR 181
           SR  G +   R P+PR S   S S    V    +E S++P   +    P+ +R
Sbjct: 250 SRSPGPRSKSRSPSPRRSRSRSRSPLPSVQ---KEGSKSPSKPSPAKSPIHTR 299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,921,969
Number of Sequences: 28952
Number of extensions: 261315
Number of successful extensions: 864
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)