Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060497.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             106   2e-23
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           95   6e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 83   2e-16
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     33   0.28 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.38 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               31   0.66 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.0  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              29   4.6  
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  106 bits (254), Expect = 2e-23
 Identities = 51/95 (53%), Positives = 65/95 (68%), Gaps = 2/95 (2%)
 Frame = +2

Query: 272 IDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 451
           +D+ L +F T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 452 TREHALLAFTLGVKQLIVGXTK--WIPLNHHTVSP 550
           TREHA+L  +LGV QLIV   K   + L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 57  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 203
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 40/81 (49%), Positives = 57/81 (70%)
 Frame = +2

Query: 263 GITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 442
           G T+++    F T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  +
Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFER 266

Query: 443 NGQTREHALLAFTLGVKQLIV 505
            GQTREHA+LA T GVK L++
Sbjct: 267 GGQTREHAMLAKTAGVKHLVI 287



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +3

Query: 141 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 254
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + E
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEE 203


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 37/41 (90%), Positives = 38/41 (92%)
 Frame = +2

Query: 257 ELGITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQ 379
           E GITIDIALWKF T KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 20  ERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +3

Query: 201 MGKGSFKYAWVLDKLKAE 254
           MGKGSFKYAWVLDKLKAE
Sbjct: 1   MGKGSFKYAWVLDKLKAE 18


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 314 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +2

Query: 263 GITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
           GI++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 64  GISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 57  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 152
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 308 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = +2

Query: 263 GITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 409
           GIT  I  +        +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 320 IIDAPGHRDFIKNMITGTSQADCAVLIV 403
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 72  THINIVVIGHVDSGKSTTTGHLIY 143
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 81   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 179
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +2

Query: 323 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 502
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 503 V 505
           +
Sbjct: 123 I 123


>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/77 (25%), Positives = 37/77 (48%)
 Frame = +3

Query: 84  IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEVSX 263
           IV +   D G       +I   GG+ K  IE   KEA++  +   +    ++KLK E++ 
Sbjct: 291 IVNVSARDKGTGREQQIVIQSSGGLSKDAIENMIKEAEKYAEADKQKK--VEKLKEEIAK 348

Query: 264 VSQSILLSGSSKLASTM 314
           V + +L +  ++   T+
Sbjct: 349 V-REVLANKDNETGETI 364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,951,420
Number of Sequences: 59808
Number of extensions: 386665
Number of successful extensions: 816
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)