Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060497.seq
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 164 5e-41
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 164 5e-41
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 161 6e-40
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 142 3e-34
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 3e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 110 8e-25
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 110 8e-25
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 99 3e-21
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 67 1e-11
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 67 1e-11
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 64 7e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 64 7e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 64 7e-11
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 36 0.036
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 34 0.082
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.082
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.25
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.25
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.77
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.77
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 1.0
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 30 1.3
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 30 1.3
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 30 1.3
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.8
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 7.1
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 28 7.1
AF100662-2|AAC68976.1| 478|Caenorhabditis elegans Hypothetical ... 27 9.4
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 164 bits (399), Expect = 5e-41
Identities = 82/119 (68%), Positives = 93/119 (78%)
Frame = +2
Query: 161 QTYHREVREGGPGNG*RILQICLGIGQTKG*GELGITIDIALWKFXTSKYYVTIIDAPGH 340
+ + +E +E G G+ + + + K E GITIDIALWKF T+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 341 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGXTK 517
RDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV K
Sbjct: 96 RDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNK 154
Score = 142 bits (343), Expect = 3e-34
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 237 DKLKAE 254
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 34.3 bits (75), Expect = 0.082
Identities = 22/58 (37%), Positives = 23/58 (39%)
Frame = +1
Query: 511 NKMDSTEPPYSEPRFXXXXXXXXXXXXXXXXXPAAVAFRAXFXDGTETTCLEPSXQMP 684
NKMDSTEPP+SE RF P AV F LE S MP
Sbjct: 153 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPF-VPISGFNGDNMLEVSSNMP 209
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 164 bits (399), Expect = 5e-41
Identities = 82/119 (68%), Positives = 93/119 (78%)
Frame = +2
Query: 161 QTYHREVREGGPGNG*RILQICLGIGQTKG*GELGITIDIALWKFXTSKYYVTIIDAPGH 340
+ + +E +E G G+ + + + K E GITIDIALWKF T+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 341 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGXTK 517
RDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV K
Sbjct: 96 RDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNK 154
Score = 142 bits (343), Expect = 3e-34
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 237 DKLKAE 254
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 34.3 bits (75), Expect = 0.082
Identities = 22/58 (37%), Positives = 23/58 (39%)
Frame = +1
Query: 511 NKMDSTEPPYSEPRFXXXXXXXXXXXXXXXXXPAAVAFRAXFXDGTETTCLEPSXQMP 684
NKMDSTEPP+SE RF P AV F LE S MP
Sbjct: 153 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPF-VPISGFNGDNMLEVSSNMP 209
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 161 bits (390), Expect = 6e-40
Identities = 79/114 (69%), Positives = 91/114 (79%)
Frame = +2
Query: 161 QTYHREVREGGPGNG*RILQICLGIGQTKG*GELGITIDIALWKFXTSKYYVTIIDAPGH 340
+ + +E +E G G+ + + + K E GITIDIALWKF T+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 341 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 502
RDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQL+
Sbjct: 96 RDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLV 149
Score = 142 bits (343), Expect = 3e-34
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 237 DKLKAE 254
DKLKAE
Sbjct: 61 DKLKAE 66
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 142 bits (343), Expect = 3e-34
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 237 DKLKAE 254
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 102 bits (245), Expect = 2e-22
Identities = 50/82 (60%), Positives = 61/82 (74%)
Frame = +2
Query: 161 QTYHREVREGGPGNG*RILQICLGIGQTKG*GELGITIDIALWKFXTSKYYVTIIDAPGH 340
+ + +E +E G G+ + + + K E GITIDIALWKF T+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 341 RDFIKNMITGTSQADCAVLIVA 406
RDFIKNMITGTSQADCAVL+VA
Sbjct: 96 RDFIKNMITGTSQADCAVLVVA 117
Score = 34.3 bits (75), Expect = 0.082
Identities = 22/58 (37%), Positives = 23/58 (39%)
Frame = +1
Query: 511 NKMDSTEPPYSEPRFXXXXXXXXXXXXXXXXXPAAVAFRAXFXDGTETTCLEPSXQMP 684
NKMDSTEPP+SE RF P AV F LE S MP
Sbjct: 119 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPF-VPISGFNGDNMLEVSSNMP 175
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 3e-33
Identities = 64/68 (94%), Positives = 64/68 (94%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 237 DKLKAEVS 260
DKLK S
Sbjct: 61 DKLKVTKS 68
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 110 bits (265), Expect = 8e-25
Identities = 53/95 (55%), Positives = 66/95 (69%)
Frame = +2
Query: 233 IGQTKG*GELGITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 412
+ +T+ E G+T+DI F TS + ++DAPGH+DFI NMITGTSQAD A+L+V A
Sbjct: 223 LDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNAT 282
Query: 413 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGXTK 517
TGEFE G GQT+EHALL +LGV QLIV K
Sbjct: 283 TGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNK 317
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +3
Query: 66 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 245
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 246 KAE 254
+ E
Sbjct: 227 EEE 229
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 110 bits (265), Expect = 8e-25
Identities = 53/95 (55%), Positives = 66/95 (69%)
Frame = +2
Query: 233 IGQTKG*GELGITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 412
+ +T+ E G+T+DI F TS + ++DAPGH+DFI NMITGTSQAD A+L+V A
Sbjct: 241 LDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNAT 300
Query: 413 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGXTK 517
TGEFE G GQT+EHALL +LGV QLIV K
Sbjct: 301 TGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNK 335
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +3
Query: 66 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 245
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 246 KAE 254
+ E
Sbjct: 245 EEE 247
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 99.1 bits (236), Expect = 3e-21
Identities = 49/115 (42%), Positives = 70/115 (60%)
Frame = +2
Query: 161 QTYHREVREGGPGNG*RILQICLGIGQTKG*GELGITIDIALWKFXTSKYYVTIIDAPGH 340
+ Y RE +E G + L C+ + E G T+++ F T K + TI+DAPGH
Sbjct: 142 EKYEREAKEKGRESW--YLSWCMDTNDEER--EKGKTVEVGRAYFETEKRHFTILDAPGH 197
Query: 341 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 505
+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L T GVK L++
Sbjct: 198 KSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVI 252
Score = 75.4 bits (177), Expect = 4e-14
Identities = 31/60 (51%), Positives = 45/60 (75%)
Frame = +3
Query: 60 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 239
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 66.9 bits (156), Expect = 1e-11
Identities = 38/85 (44%), Positives = 50/85 (58%)
Frame = +2
Query: 263 GITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 442
GITI++A + + + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 93 GITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME----- 147
Query: 443 NGQTREHALLAFTLGVKQLIVGXTK 517
QT+EH +LA +GVK + + K
Sbjct: 148 --QTKEHLILAKQVGVKNMAIFINK 170
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 69 KTHINIVVIGHVDSGKSTTT 128
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 66.9 bits (156), Expect = 1e-11
Identities = 38/85 (44%), Positives = 50/85 (58%)
Frame = +2
Query: 263 GITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 442
GITI++A + + + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 93 GITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME----- 147
Query: 443 NGQTREHALLAFTLGVKQLIVGXTK 517
QT+EH +LA +GVK + + K
Sbjct: 148 --QTKEHLILAKQVGVKNMAIFINK 170
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 69 KTHINIVVIGHVDSGKSTTT 128
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 64.5 bits (150), Expect = 7e-11
Identities = 36/76 (47%), Positives = 47/76 (61%)
Frame = +2
Query: 263 GITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 442
GITI+ ++ T+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 97 GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP----- 151
Query: 443 NGQTREHALLAFTLGV 490
QTREH LLA +GV
Sbjct: 152 --QTREHLLLARQVGV 165
Score = 35.1 bits (77), Expect = 0.047
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 63 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKG 212
++K H+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 97
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 64.5 bits (150), Expect = 7e-11
Identities = 36/76 (47%), Positives = 47/76 (61%)
Frame = +2
Query: 263 GITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 442
GITI+ ++ T+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 98 GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP----- 152
Query: 443 NGQTREHALLAFTLGV 490
QTREH LLA +GV
Sbjct: 153 --QTREHLLLARQVGV 166
Score = 35.1 bits (77), Expect = 0.047
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 63 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKG 212
++K H+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 98
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 64.5 bits (150), Expect = 7e-11
Identities = 36/76 (47%), Positives = 47/76 (61%)
Frame = +2
Query: 263 GITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 442
GITI+ ++ T+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 98 GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP----- 152
Query: 443 NGQTREHALLAFTLGV 490
QTREH LLA +GV
Sbjct: 153 --QTREHLLLARQVGV 166
Score = 35.1 bits (77), Expect = 0.047
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 63 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKG 212
++K H+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 98
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 35.5 bits (78), Expect = 0.036
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 263 GITIDIALWKFXTSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
GIT I + +K VT +D PGH F G AD VL+VAA G
Sbjct: 188 GITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDG 240
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 34.3 bits (75), Expect = 0.082
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 257 ELGITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
E GIT+ Y + +ID PGH DF + + D +L+VAA G
Sbjct: 85 ERGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 197
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGI 158
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +2
Query: 257 ELGITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
E GIT+ A + + +ID PGH DF + D V+++ G
Sbjct: 73 ERGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +2
Query: 314 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 493
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 494 QLIVGXTK 517
++I+ K
Sbjct: 127 RVIIVLNK 134
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 78 INIVVIGHVDSGKSTTT 128
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGID 161
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +2
Query: 263 GITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
GITI A + IID PGH DF + D AVL++ G G
Sbjct: 97 GITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 152
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 269 TIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
T+++ K + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 152
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 269 TIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
T+++ K + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 33 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 143
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 33 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 143
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 311 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 406
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 299 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
+ Y + IID PGH +F M AD V++V A G
Sbjct: 198 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 299 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
+ Y + IID PGH +F M AD V++V A G
Sbjct: 73 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 522 IHFVXPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 388
++ PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 11 LNLFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 320 IIDAPGHRDFIKNMITGTSQADCAVLIV 403
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 78 INIVVIGHVDSGKSTTT 128
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 263 GITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 403
GIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 68 GITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 263 GITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 403
GIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 68 GITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 314 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 409
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 27.9 bits (59), Expect = 7.1
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Frame = -1
Query: 499 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 341
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 340 VSRSINDGNIVLASXELPE---SNIDCDTXLT 254
S S +D I S SN+D L+
Sbjct: 84 FSGSKSDAEIPSTSNRCESFKWSNLDYSKYLS 115
>AF100662-2|AAC68976.1| 478|Caenorhabditis elegans Hypothetical
protein H34C03.1 protein.
Length = 478
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 156 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEVSXVSQSILLSG 290
+D+ T+E+ E QE+ GS + W++ + + ++ +SG
Sbjct: 1 MDQMTVEEKILEHQELEDGSSSFRWLVSSTVIAIGGATVALYISG 45
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,726,488
Number of Sequences: 27780
Number of extensions: 285418
Number of successful extensions: 812
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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