Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060497.seq
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 150 7e-37
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 150 7e-37
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 150 7e-37
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 150 7e-37
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 92 3e-19
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 91 6e-19
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 66 2e-11
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 63 2e-10
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 38 0.005
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 38 0.005
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 34 0.076
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 34 0.076
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 33 0.13
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 33 0.13
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 33 0.23
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 33 0.23
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 33 0.23
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 33 0.23
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 32 0.31
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 0.71
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 30 1.6
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 1.6
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 1.6
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 1.6
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 2.2
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 2.2
At4g20715.1 68417.m03010 hypothetical protein 28 5.0
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 28 6.6
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 150 bits (364), Expect = 7e-37
Identities = 70/82 (85%), Positives = 76/82 (92%)
Frame = +2
Query: 257 ELGITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 436
E GITIDIALWKF T+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGI
Sbjct: 68 ERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGI 127
Query: 437 SKNGQTREHALLAFTLGVKQLI 502
SK+GQTREHALLAFTLGVKQ+I
Sbjct: 128 SKDGQTREHALLAFTLGVKQMI 149
Score = 126 bits (303), Expect = 2e-29
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 237 DKLKAE 254
DKLKAE
Sbjct: 61 DKLKAE 66
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 150 bits (364), Expect = 7e-37
Identities = 70/82 (85%), Positives = 76/82 (92%)
Frame = +2
Query: 257 ELGITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 436
E GITIDIALWKF T+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGI
Sbjct: 68 ERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGI 127
Query: 437 SKNGQTREHALLAFTLGVKQLI 502
SK+GQTREHALLAFTLGVKQ+I
Sbjct: 128 SKDGQTREHALLAFTLGVKQMI 149
Score = 126 bits (303), Expect = 2e-29
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 237 DKLKAE 254
DKLKAE
Sbjct: 61 DKLKAE 66
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 150 bits (364), Expect = 7e-37
Identities = 70/82 (85%), Positives = 76/82 (92%)
Frame = +2
Query: 257 ELGITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 436
E GITIDIALWKF T+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGI
Sbjct: 68 ERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGI 127
Query: 437 SKNGQTREHALLAFTLGVKQLI 502
SK+GQTREHALLAFTLGVKQ+I
Sbjct: 128 SKDGQTREHALLAFTLGVKQMI 149
Score = 126 bits (303), Expect = 2e-29
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 237 DKLKAE 254
DKLKAE
Sbjct: 61 DKLKAE 66
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 150 bits (364), Expect = 7e-37
Identities = 70/82 (85%), Positives = 76/82 (92%)
Frame = +2
Query: 257 ELGITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 436
E GITIDIALWKF T+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGI
Sbjct: 68 ERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGI 127
Query: 437 SKNGQTREHALLAFTLGVKQLI 502
SK+GQTREHALLAFTLGVKQ+I
Sbjct: 128 SKDGQTREHALLAFTLGVKQMI 149
Score = 126 bits (303), Expect = 2e-29
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 237 DKLKAE 254
DKLKAE
Sbjct: 61 DKLKAE 66
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 92.3 bits (219), Expect = 3e-19
Identities = 43/85 (50%), Positives = 56/85 (65%)
Frame = +2
Query: 263 GITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 442
G T+++ F T TI+DAPGH+ ++ NMI+G SQAD VL+++A GEFE G +
Sbjct: 164 GKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYER 223
Query: 443 NGQTREHALLAFTLGVKQLIVGXTK 517
GQTREH LA TLGV +LIV K
Sbjct: 224 GGQTREHVQLAKTLGVSKLIVVVNK 248
Score = 66.1 bits (154), Expect = 2e-11
Identities = 27/63 (42%), Positives = 45/63 (71%)
Frame = +3
Query: 66 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 245
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 246 KAE 254
+ E
Sbjct: 158 EEE 160
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 91.1 bits (216), Expect = 6e-19
Identities = 41/88 (46%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Frame = +2
Query: 257 ELGITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 436
E GIT+ +A+ F + +++V ++D+PGH+DF+ NMI G +QAD A+L++ A G FEAG
Sbjct: 300 ERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEAGF 359
Query: 437 SK-NGQTREHALLAFTLGVKQLIVGXTK 517
GQTREHA + GV+Q+IV K
Sbjct: 360 DNLKGQTREHARVLRGFGVEQVIVAINK 387
Score = 73.3 bits (172), Expect = 1e-13
Identities = 30/61 (49%), Positives = 44/61 (72%)
Frame = +3
Query: 72 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 251
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 252 E 254
E
Sbjct: 298 E 298
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/85 (40%), Positives = 49/85 (57%)
Frame = +2
Query: 263 GITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 442
GITI+ A ++ T + +D PGH D++KNMITG +Q D A+L+V+ G
Sbjct: 127 GITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP----- 181
Query: 443 NGQTREHALLAFTLGVKQLIVGXTK 517
QT+EH LLA +GV ++V K
Sbjct: 182 --QTKEHILLAKQVGVPDMVVFLNK 204
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 54 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 188
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/80 (41%), Positives = 47/80 (58%)
Frame = +2
Query: 263 GITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 442
GITI A ++ T+K + +D PGH D++KNMITG +Q D +L+V+ G
Sbjct: 115 GITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMP----- 169
Query: 443 NGQTREHALLAFTLGVKQLI 502
QT+EH LLA +GV L+
Sbjct: 170 --QTKEHILLARQVGVPSLV 187
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 63 KEKTHINIVVIGHVDSGKSTTT 128
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLT 84
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 38.3 bits (85), Expect = 0.005
Identities = 28/92 (30%), Positives = 38/92 (41%)
Frame = +2
Query: 257 ELGITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 436
E GITI A Y V IID PGH DF + D A+L++ + G I
Sbjct: 116 EKGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSI 175
Query: 437 SKNGQTREHALLAFTLGVKQLIVGXTKWIPLN 532
+ + Q R + + K +G W LN
Sbjct: 176 TVDRQMRRYEVPRVAFINKLDRMGADPWKVLN 207
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGI 158
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 38.3 bits (85), Expect = 0.005
Identities = 28/92 (30%), Positives = 38/92 (41%)
Frame = +2
Query: 257 ELGITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 436
E GITI A Y V IID PGH DF + D A+L++ + G I
Sbjct: 116 EKGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSI 175
Query: 437 SKNGQTREHALLAFTLGVKQLIVGXTKWIPLN 532
+ + Q R + + K +G W LN
Sbjct: 176 TVDRQMRRYEVPRVAFINKLDRMGADPWKVLN 207
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGI 158
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 34.3 bits (75), Expect = 0.076
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 266 ITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
+ + + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 195 VPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 34.3 bits (75), Expect = 0.076
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 266 ITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
+ + + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 195 VPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +2
Query: 299 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF 478
T + +V+ +D PGH + M+ G + D A+L++AA QT EH
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAANES------CPQPQTAEHLASVD 177
Query: 479 TLGVKQLIV 505
+ +K +I+
Sbjct: 178 MMRLKHIII 186
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +2
Query: 299 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF 478
T + +V+ +D PGH + M+ G + D A+L++AA QT EH
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAANES------CPQPQTAEHLASVD 177
Query: 479 TLGVKQLIV 505
+ +K +I+
Sbjct: 178 MMRLKHIII 186
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 314 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
+T +D PGH F + G + D VL+VAA G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGG 155
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 308 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
Y + +ID+PGH DF + T +D A+++V A G
Sbjct: 74 YSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +2
Query: 311 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 490
+V+ +D PGH + M+ G + D A+LI+AA QT EH + +
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAANE------TCPQPQTAEHLASVDMMHL 173
Query: 491 KQLIV 505
K +I+
Sbjct: 174 KDIII 178
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 69 KTHINIVVIGHVDSGKSTTTGHLIYKCG 152
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 257 ELGITIDIALWKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
E GITI A K+ + IID PGH DF + D A+ + + G
Sbjct: 144 ERGITITSAATTTFWDKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG 197
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 311 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 490
+V+ +D PGH + M+ G + D A+L++AA QT EH + +
Sbjct: 122 HVSFVDCPGHDILMATMLNGAAIMDGALLLIAANE------TCPQPQTSEHLAAVEIMQL 175
Query: 491 KQLIV 505
K +I+
Sbjct: 176 KHIII 180
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 302 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
S Y + +ID PGH DF + S A+L+V A G
Sbjct: 133 SGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAAQG 171
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +3
Query: 45 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 164
D K EK N +I H+D GKST L+ G I K
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK 95
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +2
Query: 257 ELGITIDIAL----WKFXTSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
E GITI + + + + + + +ID PGH DF + + + A+L+V A G
Sbjct: 131 ERGITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 188
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 179
N +I H+D GKST L+ G + R +++
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDMKE 120
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 320 IIDAPGHRDFIKNMITGTSQADCAVLIV 403
+ID PGH F G+S D A+L+V
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 320 IIDAPGHRDFIKNMITGTSQADCAVLIV 403
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 320 IIDAPGHRDFIKNMITGTSQADCAVLIV 403
+ID PGH F G+S D A+L+V
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV 732
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 302 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 403
++Y + +ID+PGH DF + D A+++V
Sbjct: 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCG 152
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 314 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 403
+ +ID PGH F G++ D A+L+V
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV 587
>At4g20715.1 68417.m03010 hypothetical protein
Length = 186
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Frame = -1
Query: 418 TGTGSYDEHSAISLRGSCDHVLDEISVSRSIN-DGNIVLASXELPESNID----CDTXLT 254
TG S + S+ S R +LDE+S SRSI + N L + E ++D +T +T
Sbjct: 28 TGNPSNEAQSSRSNRIEIPTLLDELSGSRSIQAEVNARLLHQDHVEFDLDPVVSWNTEIT 87
Query: 253 SAFSLSNTQAYLK-DPL 206
+ +LS T++ + DPL
Sbjct: 88 AKKTLSTTESVAEFDPL 104
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 323 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
+D PGH F G D A+++VAA G
Sbjct: 557 LDTPGHEAFGAMRARGARVTDIAIIVVAADDG 588
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,110,371
Number of Sequences: 28952
Number of extensions: 275543
Number of successful extensions: 782
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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