Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060496.seq
(688 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 264 1e-69
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 186 6e-46
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 185 1e-45
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 184 2e-45
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 178 9e-44
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 178 1e-43
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 174 1e-42
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 170 3e-41
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 168 1e-40
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 165 1e-39
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 164 2e-39
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 162 8e-39
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 159 4e-38
UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei... 61 3e-08
UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Glob... 58 3e-07
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 56 8e-07
UniRef50_P15402 Cluster: RNA replication protein (147 kDa protei... 54 3e-06
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 54 4e-06
UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root... 50 7e-05
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 48 3e-04
UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Repl... 47 4e-04
UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Rep... 47 4e-04
UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replic... 46 7e-04
UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protei... 46 9e-04
UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem pitting... 46 0.001
UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protei... 46 0.001
UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic... 45 0.002
UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grap... 45 0.002
UniRef50_P09395 Cluster: RNA replication protein (165 kDa protei... 44 0.003
UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase R... 44 0.003
UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Re... 44 0.003
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 44 0.003
UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Po... 44 0.005
UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: ... 44 0.005
UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Ban... 43 0.006
UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replica... 43 0.008
UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep: Repl... 42 0.011
UniRef50_P22168 Cluster: RNA replication protein (152 kDa protei... 42 0.011
UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61; Tric... 42 0.014
UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotio... 42 0.019
UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep:... 41 0.033
UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein... 41 0.033
UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic virus|... 40 0.043
UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic v... 40 0.057
UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: ... 39 0.099
UniRef50_P17965 Cluster: RNA replication protein (147 kDa protei... 38 0.17
UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19; Fle... 37 0.53
UniRef50_A2SZW6 Cluster: Polyprotein; n=1; Blackberry virus X|Re... 36 0.93
UniRef50_A2SXZ3 Cluster: Replicase; n=2; Lolium latent virus|Rep... 36 0.93
UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep... 35 2.1
UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 34 2.8
UniRef50_A5FIA4 Cluster: Beta-N-acetylhexosaminidase precursor; ... 34 2.8
UniRef50_A2EI77 Cluster: Putative uncharacterized protein; n=3; ... 33 4.9
UniRef50_A6RJ24 Cluster: Putative uncharacterized protein; n=2; ... 33 4.9
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 264 bits (647), Expect = 1e-69
Identities = 125/145 (86%), Positives = 126/145 (86%)
Frame = +3
Query: 243 FPTLFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKT 422
F FLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEY QLSNKT
Sbjct: 1321 FRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKT 1380
Query: 423 QAVIQANANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIK 602
QAVIQANANRSDPDWRYTAVRIFSKTQHK + K QTLALMHDAIVLIFGPIK
Sbjct: 1381 QAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIK 1440
Query: 603 XYQRVFDSXDRAPNLXVYGGQTPYD 677
YQRVFDS DR PNL VYGGQTPYD
Sbjct: 1441 KYQRVFDSKDRPPNLFVYGGQTPYD 1465
Score = 182 bits (442), Expect = 1e-44
Identities = 94/130 (72%), Positives = 100/130 (76%), Gaps = 6/130 (4%)
Frame = +1
Query: 10 AIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKH 189
AIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKH
Sbjct: 1243 AIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKH 1302
Query: 190 DSKYDPTLLSASIAKRLRFRPSSFL------TDFLLLTKSLAHFCFHLYVEPINDIPIIK 351
DSKYDPTLLSASIAKRLRFRP SFL +D +L T + C P + +P
Sbjct: 1303 DSKYDPTLLSASIAKRLRFRP-SFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQP 1361
Query: 352 FLFSPTFSLN 381
LF +LN
Sbjct: 1362 DLFVECINLN 1371
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 186 bits (452), Expect = 6e-46
Identities = 85/137 (62%), Positives = 102/137 (74%)
Frame = +3
Query: 261 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQA 440
PYR+SP DE+LG L+ SLCRAY R P PF LFVECI+LNE+ QL++KTQAVI
Sbjct: 1398 PYRISPRDELLGQLLYESLCRAYHRSPTTTHPFDEALFVECIDLNEFAQLTSKTQAVIMG 1457
Query: 441 NANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVF 620
NA RSDPDWR++AVRIFSKTQHK + K QTLALMHDA+VL+ GP+K YQRVF
Sbjct: 1458 NARRSDPDWRWSAVRIFSKTQHKVNEGSIFGAWKACQTLALMHDAVVLLLGPVKKYQRVF 1517
Query: 621 DSXDRAPNLXVYGGQTP 671
D+ DR +L ++ GQTP
Sbjct: 1518 DARDRPAHLYIHAGQTP 1534
Score = 94.3 bits (224), Expect = 2e-18
Identities = 44/83 (53%), Positives = 57/83 (68%)
Frame = +1
Query: 10 AIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKH 189
A EPVYPG ++ + A + DP EI + + SNQFP VD Y AQ ++++AP H
Sbjct: 1314 AFEPVYPGETFENLVAHFLPAHDPTDREIHWRRQLSNQFPHVDKEYHLAAQPMTLLAPIH 1373
Query: 190 DSKYDPTLLSASIAKRLRFRPSS 258
DSK+DPTLL+ASI KRLRFRPS+
Sbjct: 1374 DSKHDPTLLAASIQKRLRFRPSA 1396
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 185 bits (450), Expect = 1e-45
Identities = 82/139 (58%), Positives = 101/139 (72%)
Frame = +3
Query: 261 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQA 440
PY ++P DE+LG+ L+ + CRAY R P PF PDL+ ECINLNE+ QLS+KTQA I A
Sbjct: 1357 PYVIAPRDEILGSLLYEAWCRAYHRSPRDVEPFDPDLYAECINLNEFAQLSSKTQATIMA 1416
Query: 441 NANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVF 620
NANRSDPDWR++AVRIF+KTQHK + K QTLALMHDA+VL+ GP+K YQR F
Sbjct: 1417 NANRSDPDWRWSAVRIFAKTQHKVNEGSLFGSWKACQTLALMHDAVVLLLGPVKKYQRFF 1476
Query: 621 DSXDRAPNLXVYGGQTPYD 677
D DR L V+ G TP++
Sbjct: 1477 DQRDRPSTLYVHAGHTPFE 1495
Score = 105 bits (251), Expect = 1e-21
Identities = 49/82 (59%), Positives = 63/82 (76%)
Frame = +1
Query: 10 AIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKH 189
AIEPVYPG ++++A+L + P D +S E +GE SNQFP +D P+E GAQT S++AP H
Sbjct: 1273 AIEPVYPGESFESLASLFLPPTDAESKETYFRGEMSNQFPHLDKPFELGAQTSSLLAPLH 1332
Query: 190 DSKYDPTLLSASIAKRLRFRPS 255
+SK+DPTLL ASI KRLRFR S
Sbjct: 1333 NSKHDPTLLPASIGKRLRFRHS 1354
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 184 bits (448), Expect = 2e-45
Identities = 84/137 (61%), Positives = 98/137 (71%)
Frame = +3
Query: 261 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQA 440
PY+++P DE+LG LF LCRAY R P H F P LF ECINLNE+ QLS+KTQA I
Sbjct: 1536 PYQITPKDEILGQLLFEGLCRAYHRSPFHTEAFDPVLFAECINLNEFAQLSSKTQATIMG 1595
Query: 441 NANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVF 620
NA RSDPDWR++AVRIFSKTQHK + K QTLALMHDA+VLI GP+K YQRVF
Sbjct: 1596 NARRSDPDWRWSAVRIFSKTQHKVNEGSIFGSWKACQTLALMHDAVVLILGPVKKYQRVF 1655
Query: 621 DSXDRAPNLXVYGGQTP 671
D DR +L ++ G TP
Sbjct: 1656 DQRDRPRHLYIHAGNTP 1672
Score = 85.0 bits (201), Expect = 2e-15
Identities = 41/80 (51%), Positives = 52/80 (65%)
Frame = +1
Query: 16 EPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDS 195
EPVYPG ++ +AA + DP EI +G+ SNQFP +D + AQ +S++A H
Sbjct: 1454 EPVYPGETFENLAAHFLPAHDPTDREIYWQGQLSNQFPHMDKEFHLAAQPMSLLAAIHQE 1513
Query: 196 KYDPTLLSASIAKRLRFRPS 255
K DPTLL ASI KRLRFRPS
Sbjct: 1514 KQDPTLLPASIQKRLRFRPS 1533
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 178 bits (434), Expect = 9e-44
Identities = 82/137 (59%), Positives = 102/137 (74%)
Frame = +3
Query: 261 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQA 440
PY ++PSD++LG LFSSLC AY R+PN +PFQP+LF ECI +N+Y QLS+KTQA I A
Sbjct: 1417 PYSITPSDQLLGQHLFSSLCLAYGRNPNSVLPFQPELFSECICINDYAQLSSKTQATIVA 1476
Query: 441 NANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVF 620
N RSDPDWR TAVRIF+K QHK A + K QTLALMH I+L+ GP+K YQR+F
Sbjct: 1477 NHQRSDPDWRLTAVRIFAKAQHKVNDASIFSGWKACQTLALMHGYIILVLGPVKKYQRIF 1536
Query: 621 DSXDRAPNLXVYGGQTP 671
DS DR P++ + G+TP
Sbjct: 1537 DSKDRPPHIYYHCGKTP 1553
Score = 77.0 bits (181), Expect = 4e-13
Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 5/140 (3%)
Frame = +1
Query: 13 IEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHD 192
I P G ++ +AA + DPD E+ + SNQFP++D P+E Q S++AP H
Sbjct: 1334 ISPAICGYTFENLAAFFLPAHDPDLKEVLINDQKSNQFPYLDAPFELSCQPSSLLAPIHK 1393
Query: 193 SKYDPTLLSASIAKRLRFRPSS-----FLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFL 357
DPTLL SI KRLRFR SS +D LL + C P + +P L
Sbjct: 1394 PASDPTLLPGSIKKRLRFRASSSPYSITPSDQLLGQHLFSSLCLAYGRNPNSVLPFQPEL 1453
Query: 358 FSPTFSLNVSISMSTHSFPT 417
FS +N +S+ + T
Sbjct: 1454 FSECICINDYAQLSSKTQAT 1473
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 178 bits (433), Expect = 1e-43
Identities = 79/137 (57%), Positives = 100/137 (72%)
Frame = +3
Query: 261 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQA 440
P++++ D VLG LF SLCRAY R PN VPF P+LF ECI+LNEY QLS+KTQ+ I A
Sbjct: 1421 PHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAECISLNEYAQLSSKTQSTIVA 1480
Query: 441 NANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVF 620
NA+RSDPDWR+T V+IF+K QHK K QTLALMHD ++L+ GP+K YQR+F
Sbjct: 1481 NASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALMHDYVILVLGPVKKYQRIF 1540
Query: 621 DSXDRAPNLXVYGGQTP 671
D+ DR PN+ + G+TP
Sbjct: 1541 DNADRPPNIYSHCGKTP 1557
Score = 99.1 bits (236), Expect = 9e-20
Identities = 57/145 (39%), Positives = 79/145 (54%), Gaps = 5/145 (3%)
Frame = +1
Query: 19 PVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSK 198
PVYPG + ++AA + DP + EI HK + SNQFPW D P+ Q S+I+ KH
Sbjct: 1340 PVYPGEFFDSLAAFFLPAHDPSTREILHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPN 1399
Query: 199 YDPTLLSASIAKRLRFRPS----SFLTDFLLLTKSLAHFCFHLYV-EPINDIPIIKFLFS 363
+DPTLL ASI KRLRFRPS D ++L L H Y +P + +P LF+
Sbjct: 1400 HDPTLLPASINKRLRFRPSDSPHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFA 1459
Query: 364 PTFSLNVSISMSTHSFPTRLKLSSK 438
SLN +S+ + T + +S+
Sbjct: 1460 ECISLNEYAQLSSKTQSTIVANASR 1484
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 174 bits (424), Expect = 1e-42
Identities = 79/137 (57%), Positives = 99/137 (72%)
Frame = +3
Query: 261 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQA 440
PYR++ DE+LG+ LF + C A R P+ VPF +LF ECI LNE+ QLS+KTQA+I A
Sbjct: 1430 PYRITSKDEILGSLLFDAHCTAMLRSPSASVPFDENLFAECIALNEFAQLSSKTQAIIMA 1489
Query: 441 NANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVF 620
N +RSDPDWR++AVRIF+KTQHK K QTLALMHDA+VL+ GP+K YQR+F
Sbjct: 1490 NRDRSDPDWRWSAVRIFAKTQHKVNDHSIFGGWKACQTLALMHDAVVLLLGPVKKYQRIF 1549
Query: 621 DSXDRAPNLXVYGGQTP 671
D+ DR N+ VY G TP
Sbjct: 1550 DAADRPANIFVYAGHTP 1566
Score = 33.1 bits (72), Expect = 6.5
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +1
Query: 208 TLLSASIAKRLRFRPSSF---LT--DFLLLTKSLAHFCFHLYVEPINDIPIIKFLFSPTF 372
T L ASI KRLRFRPSS +T D +L + C + P +P + LF+
Sbjct: 1412 TFLPASIGKRLRFRPSSAPYRITSKDEILGSLLFDAHCTAMLRSPSASVPFDENLFAECI 1471
Query: 373 SLNVSISMST 402
+LN +S+
Sbjct: 1472 ALNEFAQLSS 1481
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 170 bits (413), Expect = 3e-41
Identities = 78/138 (56%), Positives = 97/138 (70%)
Frame = +3
Query: 264 YRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQAN 443
Y+LS D++LG L+ S CRAY RHP VPF LF ECIN+NE+ Q SNKT++ I AN
Sbjct: 1355 YQLSSKDQILGLTLYHSWCRAYNRHPQAVVPFDELLFAECININEFAQSSNKTKSTIIAN 1414
Query: 444 ANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVFD 623
A+RSDPDWR TAV+IFSKTQHK +A K QTLALMHD +VL GP+K YQR+FD
Sbjct: 1415 ASRSDPDWRITAVKIFSKTQHKINEASIFGSWKACQTLALMHDYVVLFLGPVKIYQRIFD 1474
Query: 624 SXDRAPNLXVYGGQTPYD 677
S +R N+ + G +P +
Sbjct: 1475 SQERPANVYYHAGHSPLE 1492
Score = 85.8 bits (203), Expect = 9e-16
Identities = 54/149 (36%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Frame = +1
Query: 10 AIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFP-WVDLPYENGAQTLSVIAPK 186
AI VYPG ++ +AA + DP+ EI H+GEFS QFP ++ + AQ+ ++IA K
Sbjct: 1269 AITAVYPGESFENLAAHFLPAHDPEIKEILHRGEFSAQFPILLNQDFSLSAQSSTLIAAK 1328
Query: 187 HDSKYDPTLLSASIAKRLRFRPSSFLTDFLLLTKSLAHFCFHLYVEPIND-----IPIIK 351
HDSK DPTLL ASI KRL FRPS + L +H + N +P +
Sbjct: 1329 HDSKRDPTLLVASITKRLCFRPSDSSYQLSSKDQILGLTLYHSWCRAYNRHPQAVVPFDE 1388
Query: 352 FLFSPTFSLNVSISMSTHSFPTRLKLSSK 438
LF+ ++N S + T + +S+
Sbjct: 1389 LLFAECININEFAQSSNKTKSTIIANASR 1417
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 168 bits (408), Expect = 1e-40
Identities = 77/139 (55%), Positives = 100/139 (71%)
Frame = +3
Query: 261 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQA 440
P+ LS D +LG LF +LC+AY+R+P H PF P LF ECI LN+Y QLS+KTQA + A
Sbjct: 1451 PHVLSAIDVLLGNQLFFNLCKAYRRNPTHVGPFNPALFAECIALNDYAQLSSKTQATLVA 1510
Query: 441 NANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVF 620
N +RSDPDWR+TAV+IF+K+QHK A K QTLALMHD ++L GP+K YQR+F
Sbjct: 1511 NHSRSDPDWRHTAVKIFAKSQHKVNDASIFGNWKACQTLALMHDFVILSLGPVKKYQRIF 1570
Query: 621 DSXDRAPNLXVYGGQTPYD 677
D+ DR P+L + G++P D
Sbjct: 1571 DALDRPPHLYTHCGKSPAD 1589
Score = 82.2 bits (194), Expect = 1e-14
Identities = 49/138 (35%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
Frame = +1
Query: 19 PVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSK 198
PVYPG +++ +AA + DP+ E+ + + S QFPW D P+ Q S+IA KH
Sbjct: 1370 PVYPGENFENLAAFFLPAHDPELKEVTRRDQTSAQFPWFDRPFSLSCQPSSLIAAKHSPS 1429
Query: 199 YDPTLLSASIAKRLRFRPSS-----FLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFS 363
DPTLL SI KRLRFR S D LL + + C P + P LF+
Sbjct: 1430 QDPTLLPFSIPKRLRFRKSDNPHVLSAIDVLLGNQLFFNLCKAYRRNPTHVGPFNPALFA 1489
Query: 364 PTFSLNVSISMSTHSFPT 417
+LN +S+ + T
Sbjct: 1490 ECIALNDYAQLSSKTQAT 1507
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 165 bits (400), Expect = 1e-39
Identities = 74/139 (53%), Positives = 94/139 (67%)
Frame = +3
Query: 261 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQA 440
PY +P+D +LG LF SLC Y RHP+ +PF P LF ECI +N+Y QLS+KT+A I A
Sbjct: 1320 PYCFTPNDFILGEHLFQSLCSVYNRHPSESIPFDPVLFAECICINDYAQLSSKTKATIVA 1379
Query: 441 NANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVF 620
NA RSDPDWRYT+V+IF+K+QHK K QTLALMHD ++L GP+K YQR F
Sbjct: 1380 NAERSDPDWRYTSVKIFAKSQHKVNDGSIFGNWKACQTLALMHDYVILTLGPVKKYQRFF 1439
Query: 621 DSXDRAPNLXVYGGQTPYD 677
D D ++ + G+TP D
Sbjct: 1440 DQKDCPAHIYKHCGKTPAD 1458
Score = 73.3 bits (172), Expect = 5e-12
Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 5/138 (3%)
Frame = +1
Query: 19 PVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSK 198
P YP ++ +AA + DPD E+ ++ + S+QFP++D P+ Q S+IA H
Sbjct: 1239 PAYPEETFENLAAFFLPAHDPDLKEMLYRDDASSQFPYLDSPFLLSCQPSSLIAAIHKPA 1298
Query: 199 YDPTLLSASIAKRLRFRPSS----FL-TDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFS 363
D TLL S+ KRLRFRPS+ F DF+L C P IP LF+
Sbjct: 1299 TDSTLLPLSVNKRLRFRPSTSPYCFTPNDFILGEHLFQSLCSVYNRHPSESIPFDPVLFA 1358
Query: 364 PTFSLNVSISMSTHSFPT 417
+N +S+ + T
Sbjct: 1359 ECICINDYAQLSSKTKAT 1376
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 164 bits (399), Expect = 2e-39
Identities = 72/139 (51%), Positives = 98/139 (70%)
Frame = +3
Query: 261 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQA 440
PY+++PSD LG L+ S C+ Y+R PN ++PF LF+ECI +N+Y QLS+KTQA I A
Sbjct: 1324 PYQITPSDSFLGNCLYRSWCQVYRRDPNVRLPFNEALFLECIAVNDYAQLSSKTQATIVA 1383
Query: 441 NANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVF 620
NA+RSDPDWR+T V+IF+K+QHK K QTLALMHD ++L GP+K YQR+F
Sbjct: 1384 NASRSDPDWRHTFVKIFAKSQHKVNDGSIFGPWKACQTLALMHDYVILTLGPVKKYQRLF 1443
Query: 621 DSXDRAPNLXVYGGQTPYD 677
D +R ++ + G TP+D
Sbjct: 1444 DQLERPSHIYYHAGNTPHD 1462
Score = 78.2 bits (184), Expect = 2e-13
Identities = 37/79 (46%), Positives = 51/79 (64%)
Frame = +1
Query: 22 VYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKY 201
VYPG D+ T+AA + DP+ EI K + S QFPW++L + QT S+I+ +H
Sbjct: 1244 VYPGFDFFTLAAHFLPAHDPEVKEIELKDQTSQQFPWLNLDFHISCQTSSLISARHQPGS 1303
Query: 202 DPTLLSASIAKRLRFRPSS 258
D TLL AS+ KRLRFRP++
Sbjct: 1304 DSTLLPASLHKRLRFRPTA 1322
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 162 bits (393), Expect = 8e-39
Identities = 73/137 (53%), Positives = 94/137 (68%)
Frame = +3
Query: 261 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQA 440
PY +P+D +LG L+++ C+A+ R PN +PF P LF ECI LNEY QLS+KTQA I +
Sbjct: 1347 PYAFTPNDLILGHLLYTNWCKAFGRCPNSTIPFNPALFAECICLNEYAQLSSKTQATIVS 1406
Query: 441 NANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVF 620
NA+RSDPDWRYT VRIF+K+QHK K QTLALMHD ++L GP+K YQR+
Sbjct: 1407 NASRSDPDWRYTVVRIFAKSQHKVNDGSIFGSWKACQTLALMHDFVILTLGPVKKYQRII 1466
Query: 621 DSXDRAPNLXVYGGQTP 671
D DR + + G+TP
Sbjct: 1467 DHYDRPNFIYTHCGKTP 1483
Score = 68.5 bits (160), Expect = 1e-10
Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Frame = +1
Query: 31 GCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPT 210
G ++ +AA + DPD E+ + S QFP++D PY Q S++A H DPT
Sbjct: 1270 GESFEELAAHFLPAHDPDLKEVTVGDQTSQQFPYLDQPYTLSCQPSSLLAASHKPASDPT 1329
Query: 211 LLSASIAKRLRFRPSS----FLTDFLLLTKSL-AHFCFHLYVEPINDIPIIKFLFSPTFS 375
LL SI+KRLRFR SS F + L+L L ++C P + IP LF+
Sbjct: 1330 LLIFSISKRLRFRASSSPYAFTPNDLILGHLLYTNWCKAFGRCPNSTIPFNPALFAECIC 1389
Query: 376 LNVSISMSTHSFPTRLKLSSK 438
LN +S+ + T + +S+
Sbjct: 1390 LNEYAQLSSKTQATIVSNASR 1410
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 159 bits (387), Expect = 4e-38
Identities = 76/138 (55%), Positives = 95/138 (68%)
Frame = +3
Query: 261 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQA 440
PY ++ D+ LG L+ SL RAY R P VPF P LF CI N++ QL++KTQA IQA
Sbjct: 1533 PYTITAKDQALGYILYHSLQRAYCRSPE-PVPFDPVLFASCIAENDFAQLTSKTQATIQA 1591
Query: 441 NANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVF 620
NA RSDPDWR+T VRIFSKTQHK + K QTLALMHD ++L+ GP+K YQR+
Sbjct: 1592 NAFRSDPDWRHTFVRIFSKTQHKVNENSLFTSWKACQTLALMHDYLILVLGPVKKYQRIL 1651
Query: 621 DSXDRAPNLXVYGGQTPY 674
DS DR +L ++ GQTP+
Sbjct: 1652 DSRDRPAHLYIHAGQTPH 1669
Score = 82.6 bits (195), Expect = 8e-15
Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Frame = +1
Query: 16 EPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDS 195
E VYPG D + +A + DP LEI + +SNQFP+++ P L+++AP H+
Sbjct: 1451 ETVYPGVDGEALARTFLAATDPLELEIFFRNNWSNQFPFINRPDTVACNPLTLVAPTHNQ 1510
Query: 196 KYDPTLLSASIAKRLRFRPSSFLTDFLLLTKSLAHFCFH----LYVEPINDIPIIKFLFS 363
K DPTLL AS+AKRLRFR S+ ++L + +H Y +P LF+
Sbjct: 1511 KQDPTLLHASLAKRLRFRDSTAPYTITAKDQALGYILYHSLQRAYCRSPEPVPFDPVLFA 1570
Query: 364 PTFSLN 381
+ N
Sbjct: 1571 SCIAEN 1576
>UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Strawberry mild
yellow edge-associated virus (SMYEaV)
Length = 1323
Score = 60.9 bits (141), Expect = 3e-08
Identities = 37/129 (28%), Positives = 62/129 (48%)
Frame = +3
Query: 291 LGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWR 470
+G LF + RA K P + +PF DL+ C N + LS +++ A R DPD+
Sbjct: 965 IGDLLFINYHRAMKL-PKNPIPFDKDLWQSCKNEVQKTYLSKDVGSIVNGVA-RQDPDFP 1022
Query: 471 YTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVFDSXDRAPNLX 650
+++F K+Q + + K GQT+A A V+++G + Y R + N+
Sbjct: 1023 INEIKLFLKSQWVKKVEKLGMVVKPGQTIASFAQAPVMLYGTMARYMRRMREVYQPSNIF 1082
Query: 651 VYGGQTPYD 677
+ +TP D
Sbjct: 1083 INCEKTPAD 1091
>UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Globe
virus|Rep: Replicase RdRp - Grapevine Red Globe virus
Length = 424
Score = 57.6 bits (133), Expect = 3e-07
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +3
Query: 501 QHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVFDSXDRAPNLXVYGGQTPYD 677
QHK +A + K QTLAL HDA++L+ GP+K YQR FD+ R + + TP++
Sbjct: 1 QHKVNEASIFSDWKACQTLALAHDAVILLLGPVKKYQRCFDNKARPSKIYYHASHTPFE 59
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 56.0 bits (129), Expect = 8e-07
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 3/134 (2%)
Frame = +3
Query: 285 EVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPD 464
+V G+ LF + RA P + F L EC N+ L++K A + NA RSDP
Sbjct: 1528 KVAGSELFEAFTRAI---PLPQETFNDSLLEECRTENDTVHLTSKPLATLINNAERSDPS 1584
Query: 465 WRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVFDSXDRA-- 638
W +++F K Q + + GQ++A ++L +GP Y R D RA
Sbjct: 1585 WSLNMIKLFIKGQTVKKLEKMGSDATAGQSIASFRAEVLLAWGP---YARYIDRRIRALL 1641
Query: 639 -PNLXVYGGQTPYD 677
P++ ++ +T D
Sbjct: 1642 PPHVYIHSRRTNED 1655
>UniRef50_P15402 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - White clover
mosaic virus (strain O) (WCMV)
Length = 1294
Score = 54.0 bits (124), Expect = 3e-06
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Frame = +3
Query: 291 LGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWR 470
+G LF + +A P +PF PDL+ C E L A++ A A R PD+
Sbjct: 931 IGDILFLNYKQAMNL-PQDPIPFNPDLWTLCRQEIENTYLKKSAAALVNA-ATRQSPDFD 988
Query: 471 YTAVRIFSKTQHKSTKAQFSALG-KHGQTLALMHDAIVLIFGPIKXYQRVFDSXDRAPNL 647
A+ +F K+Q + L K GQT+A V+I+G + Y R F + +
Sbjct: 989 SHAIALFLKSQWVKKTEKIGCLKIKAGQTIAAFMQQTVMIYGTMARYMRKFRNQYCPRKI 1048
Query: 648 XVYGGQTPYD 677
V TP D
Sbjct: 1049 FVNCETTPAD 1058
>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
Potexvirus|Rep: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Papaya mosaic
potexvirus (PMV)
Length = 1547
Score = 53.6 bits (123), Expect = 4e-06
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Frame = +3
Query: 291 LGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWR 470
+G LF S RA P +PF+ DL+ ++ + LS K + +I+ R PD+
Sbjct: 1181 VGEVLFESYKRAMHL-PKMPIPFEEDLWNSSMHEVQKTYLS-KPENMIKNGMARQSPDYD 1238
Query: 471 YTAVRIFSKTQHKSTKAQFSALG-KHGQTLALMHDAIVLIFGPIKXYQRVFDSXDRAPNL 647
+ +F K+Q + A+ K GQT+A H A V++FG + Y R + ++
Sbjct: 1239 PNVISLFLKSQWVKKMEKLGAIKIKPGQTIASFHQATVMLFGTMARYMRRMREVFQPAHI 1298
Query: 648 XVYGGQTPYDALS 686
+ TP D S
Sbjct: 1299 RINCEMTPEDLSS 1311
>UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root|Rep:
RNA-dependent RNA polymerase - Tulip virus X
Length = 1361
Score = 49.6 bits (113), Expect = 7e-05
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Frame = +3
Query: 291 LGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWR 470
LG L+ + RA K P + F P+L+ C + LS Q I+ R PD+
Sbjct: 1000 LGDVLWENYHRAMKL-PKEQPDFSPELWERCAAEVQQTYLSKSLQQ-IKGGERRQSPDFP 1057
Query: 471 YTAVRIFSKTQHKSTKAQFSALG-KHGQTLALMHDAIVLIFGPIKXYQRVFDSXDRAPNL 647
+ IF K+Q + A K GQT+A A V+++G + Y R + N+
Sbjct: 1058 ENKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAVMLYGTMARYMRRYRDALGPNNI 1117
Query: 648 XVYGGQTPYD 677
+ +TP D
Sbjct: 1118 MINCERTPAD 1127
>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X|Rep:
158kDa replicase - Botrytis virus X
Length = 1413
Score = 47.6 bits (108), Expect = 3e-04
Identities = 32/109 (29%), Positives = 49/109 (44%)
Frame = +3
Query: 327 YKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQH 506
+ + P +PF P L+ E E LS KT A I ANR DPD+ V +F K+Q
Sbjct: 1016 FMKVPKDPMPFNPTLWAESRARAERTYLS-KTAAQILNGANRQDPDFPDNFVALFLKSQW 1074
Query: 507 KSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVFDSXDRAPNLXV 653
+ K GQT++ +VL+ + Y R + + N+ +
Sbjct: 1075 VKKLEKVGMQFKAGQTISSFKQQVVLLTTTLALYLRACRNSHQPDNVFI 1123
>UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Replicase
- Hosta virus X
Length = 1507
Score = 47.2 bits (107), Expect = 4e-04
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Frame = +3
Query: 291 LGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWR 470
+G LF + +A P +PF+ DL+ C + LS K +I+ R PD+
Sbjct: 1133 IGDLLFHAYHKAMGL-PKDPIPFENDLWETCAQEVQQTYLS-KPINLIKNGEKRQGPDFD 1190
Query: 471 YTAVRIFSKTQHKSTKAQFSALG-KHGQTLALMHDAIVLIFGPIKXYQR 614
A+ +F K+Q + A K GQT+A H V+++G + Y R
Sbjct: 1191 KNAIMLFLKSQWVKKMEKLGAPTIKPGQTIASFHQITVMLYGTMARYMR 1239
>UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep:
Replicase - Garlic virus A
Length = 1625
Score = 47.2 bits (107), Expect = 4e-04
Identities = 34/126 (26%), Positives = 56/126 (44%)
Frame = +3
Query: 294 GTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWRY 473
G LF + + + + P F L+ C L LS K A +Q A+R DPD+
Sbjct: 1193 GDLLFEAYAQ-FMKVPAEPQAFDKRLWTHCRQLALRTYLS-KPAANLQQGASRQDPDFPD 1250
Query: 474 TAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVFDSXDRAPNLXV 653
A+ +F+K+Q + A K GQT++ +VL+ + Y R + N+ +
Sbjct: 1251 NAIALFNKSQWVKKLEKVGAKFKAGQTISAFKQQVVLLTTTMALYLRKKREQHQPDNVFI 1310
Query: 654 YGGQTP 671
+TP
Sbjct: 1311 MCERTP 1316
>UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replicase -
Cherry necrotic rusty mottle virus
Length = 2038
Score = 46.4 bits (105), Expect = 7e-04
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Frame = +3
Query: 348 KVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKSTKAQF 527
K F LF E N E +L K+ A ++ ++ RSDPDW IF K+Q +
Sbjct: 1691 KPAFDHLLFDEARNDFEEKKLG-KSMATLENHSGRSDPDWEVEKALIFMKSQLCTKFDNR 1749
Query: 528 SALGKHGQTLALMHDAIVLIFGPIKXY--QRVFDSXDRAPNLXVYGGQ 665
K GQTLA H ++ P Y ++VF + R NL ++ G+
Sbjct: 1750 YRDAKAGQTLACFHHNVLCRLAPYVRYIEKKVFKALPR--NLYIHSGK 1795
>UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Plantago asiatica
mosaic potexvirus (P1AMV)
Length = 1385
Score = 46.0 bits (104), Expect = 9e-04
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
Frame = +3
Query: 291 LGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWR 470
LG L+ + RA P + F DL+ C + L KT A ++ R PD+
Sbjct: 1024 LGDILWVNYHRAMGL-PKEQPDFSEDLWNRCAEEVQNTYLK-KTMAQLKGGERRQSPDFH 1081
Query: 471 YTAVRIFSKTQHKSTKAQFSALG-KHGQTLALMHDAIVLIFGPIKXYQRVFDSXDRAPNL 647
+ IF K+Q + A K GQT+A V+++G + Y R F N+
Sbjct: 1082 EHQILIFLKSQWVKKMEKLGAKEIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI 1141
Query: 648 XVYGGQTPYD 677
+ +TP D
Sbjct: 1142 MINCEKTPQD 1151
>UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem
pitting-associated virus|Rep: Replicase - Rupestris stem
pitting associated virus-1
Length = 2161
Score = 45.6 bits (103), Expect = 0.001
Identities = 26/85 (30%), Positives = 40/85 (47%)
Frame = +3
Query: 411 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIF 590
++K+ A I+ +A RS DW IF K+QH + + K GQTLA A+++ F
Sbjct: 1844 ASKSAATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVLVRF 1903
Query: 591 GPIKXYQRVFDSXDRAPNLXVYGGQ 665
P Y PN ++ G+
Sbjct: 1904 APYMRYIEKKLMQALKPNFYIHSGK 1928
>UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Allexivirus|Rep: RNA replication protein (194 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Shallot virus X (ShVX)
Length = 1718
Score = 45.6 bits (103), Expect = 0.001
Identities = 33/126 (26%), Positives = 54/126 (42%)
Frame = +3
Query: 294 GTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWRY 473
G LF + + + + P PF L+ C L LS T + Q R DPD+
Sbjct: 1276 GDLLFEAYAQ-FMKVPKETQPFDKRLWTHCRQLALRTYLSKPTSNLQQGA--RQDPDFPD 1332
Query: 474 TAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVFDSXDRAPNLXV 653
A+ +F+K+Q + A K GQT++ +VL+ + Y R + N+ +
Sbjct: 1333 NAIALFNKSQWVKKLEKVGARFKAGQTISAFKQEVVLLTTTMALYLRKKREQHQPDNVFI 1392
Query: 654 YGGQTP 671
+TP
Sbjct: 1393 MCERTP 1398
>UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase -
Garlic virus C
Length = 1550
Score = 45.2 bits (102), Expect = 0.002
Identities = 33/126 (26%), Positives = 53/126 (42%)
Frame = +3
Query: 294 GTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWRY 473
G LF + ++ P F L+ C L LS T A +Q A R DPD+
Sbjct: 1118 GDLLFEAYA-SFMNVPKETQAFDKRLWAHCRQLALRTYLSKPT-ANLQQGAKRQDPDFPE 1175
Query: 474 TAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVFDSXDRAPNLXV 653
A+ +F+K+Q + K GQT++ + VL+ + Y R + N+ +
Sbjct: 1176 NAIALFNKSQWVKKLEKVGCRFKAGQTISAFKQSTVLLTTTMALYLRKKREGHQPDNVFI 1235
Query: 654 YGGQTP 671
+TP
Sbjct: 1236 MCEKTP 1241
>UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grapevine
virus A|Rep: RNA-dependent RNA polymerase - Grapevine
virus A
Length = 1707
Score = 44.8 bits (101), Expect = 0.002
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +3
Query: 417 KTQAVIQANANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGP 596
K+ +I+ +A RSDPDW ++IF K Q + + K GQT+A +++ FGP
Sbjct: 1371 KSAGLIEQHAGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFGP 1430
Query: 597 I 599
I
Sbjct: 1431 I 1431
>UniRef50_P09395 Cluster: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Potato virus
X|Rep: RNA replication protein (165 kDa protein) (ORF 1
protein) [Includes: RNA-directed RNA polymerase (EC
2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus X (PVX)
Length = 1456
Score = 44.4 bits (100), Expect = 0.003
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Frame = +3
Query: 279 SDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSD 458
S + +G LF + +A P ++PF +++ C + + LS +I +S
Sbjct: 1092 SKKDIGDVLFLNYQKAMGL-PKERIPFSQEVWEACAHEVQSKYLSKSKCNLINGTVRQS- 1149
Query: 459 PDWRYTAVRIFSKTQHKSTKAQFSALGK--HGQTLALMHDAIVLIFGPIKXYQRVFDSXD 632
PD+ + +F K+Q TK + L K GQT+A + V++FG + Y R F
Sbjct: 1150 PDFDENKIMVFLKSQWV-TKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAF 1208
Query: 633 RAPNLXVYGGQTPYD 677
+ + + TP D
Sbjct: 1209 QPKEVFINCETTPED 1223
>UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase RdRp;
n=1; Indian citrus ringspot virus|Rep: Putative
RNA-dependent RNA polymerase RdRp - Indian citrus
ringspot virus
Length = 1658
Score = 44.0 bits (99), Expect = 0.003
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = +3
Query: 339 PNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKSTK 518
P +PFQ L+ C + LS A+ A A R DPD+ +++F K+Q
Sbjct: 1312 PADPIPFQQSLWDSCQAEVQQTYLSKPLAALANA-AQRQDPDFDSNKIQLFLKSQWVKKV 1370
Query: 519 AQFSALG-KHGQTLALMHDAIVLIFGPIKXYQR 614
+ L K GQT+A V+++G + Y R
Sbjct: 1371 EKLGCLKIKPGQTIASFMQQTVMLYGTMARYMR 1403
>UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Rep:
ORF1=155k - Bamboo mosaic virus
Length = 1365
Score = 44.0 bits (99), Expect = 0.003
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Frame = +3
Query: 339 PNHKVPFQPDLFVECIN--LNEYXQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKS 512
P + F PDL+ +C + N+Y Q K +I+ R PD+ + +F K+Q
Sbjct: 1011 PAEPIKFDPDLWWKCADEVQNKYLQ---KPLHMIKNGILRQSPDFGERHIALFLKSQWVK 1067
Query: 513 TKAQFSALG-KHGQTLALMHDAIVLIFGPIKXYQR 614
+ + K GQT+A + + V+IFG + Y R
Sbjct: 1068 KNEKIGTVNVKAGQTIAAFYQSTVMIFGTMARYMR 1102
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|Rep:
Replicase protein - Nerine virus X
Length = 1504
Score = 44.0 bits (99), Expect = 0.003
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
Frame = +3
Query: 291 LGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWR 470
+G LF + A P +PF+ L+ C E L+ A+I + +S PD+
Sbjct: 1151 IGDILFENYAIAMNV-PKEPLPFETTLWQACREEVEKTYLAKPVSALINGSLRQS-PDFH 1208
Query: 471 YTAVRIFSKTQHKSTKAQFSALG-KHGQTLALMHDAIVLIFGPIKXYQRVFDSXDRAPNL 647
A+ +F K+Q + L K GQT+A V+++G + Y R + +
Sbjct: 1209 PDAISLFLKSQWVKKVEKLGCLHVKPGQTIASFMQETVMVYGTMSRYMRRIRQQHQPAEI 1268
Query: 648 XVYGGQTPYD 677
+ + P D
Sbjct: 1269 FINCEKNPED 1278
>UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4;
Potexvirus|Rep: Replication-associated protein - Opuntia
virus X
Length = 1555
Score = 43.6 bits (98), Expect = 0.005
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Frame = +3
Query: 279 SDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSD 458
S + LG LF + A P + F L+ C + + LS K +IQ NR
Sbjct: 1195 SKKHLGDVLFENYKLAMGL-PKEPIAFDQKLWEVCADEVQKTYLS-KPINMIQNGQNRQS 1252
Query: 459 PDWRYTAVRIFSKTQH-KSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVFDSXDR 635
PD+ A+ +F K+Q K + K GQT+A V+++G + Y R +
Sbjct: 1253 PDFDPKAISLFLKSQWVKKVEKLGQPRIKAGQTIASFQQEAVMLYGTMARYMRRVREVFQ 1312
Query: 636 APNLXVYGGQTPYD 677
N+ + +TP D
Sbjct: 1313 PANIFINCERTPED 1326
>UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: RNA
replicase - Cherry virus A
Length = 2342
Score = 43.6 bits (98), Expect = 0.005
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Frame = +3
Query: 348 KVPFQPD----LFVECINLNEYXQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKST 515
KVP P+ ++ E ++ E ++S K A+I A+ +RS DW + +F K+Q +
Sbjct: 1293 KVPLMPNFDQRMYDESVSEFEEKKIS-KNAAMIGAHHDRSTTDWPTNEIFLFIKSQLCTK 1351
Query: 516 KAQFSALGKHGQTLALMHDAIVLIFGPIKXY 608
K + K GQTLA I+ F P+ Y
Sbjct: 1352 KEKMFCDAKAGQTLACFSHLILCKFAPLNRY 1382
>UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Banana
mild mosaic virus|Rep: RNA-dependant RNA polymerase -
Banana mild mosaic virus
Length = 1771
Score = 43.2 bits (97), Expect = 0.006
Identities = 31/121 (25%), Positives = 56/121 (46%)
Frame = +3
Query: 324 AYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 503
A+++ K F + F+E E +L K++A I+ +A RS+ +W+ IF K+Q
Sbjct: 1415 AFEKFVPIKSNFSREKFIEAKMEFESKKLE-KSKATIENHAQRSNREWKIDEAMIFMKSQ 1473
Query: 504 HKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQRVFDSXDRAPNLXVYGGQTPYDAL 683
+ + K GQTLA ++ F P Y + + N ++ G+ +D L
Sbjct: 1474 LCTKFEKRFVEAKAGQTLACFSHIVLCRFAPYVRYMEKIVNENLPKNFYIHNGKN-FDDL 1532
Query: 684 S 686
+
Sbjct: 1533 N 1533
>UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replicase -
Garlic latent virus
Length = 1924
Score = 42.7 bits (96), Expect = 0.008
Identities = 30/105 (28%), Positives = 48/105 (45%)
Frame = +3
Query: 294 GTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWRY 473
G FL + P+H+ DL E ++ E ++S K+ A+I+ +ANRS DW
Sbjct: 1571 GKFLLDEFLKRVPLKPHHR----HDLMSEALHEFEEKKVS-KSAAIIENHANRSCSDWLA 1625
Query: 474 TAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXY 608
+FSK+Q S K QT+ ++++ F P Y
Sbjct: 1626 DVGLVFSKSQICSKWDNRFRSAKAAQTIVCFQHSVLVRFAPYMRY 1670
>UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep:
Replicase - Mint virus 2
Length = 500
Score = 42.3 bits (95), Expect = 0.011
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +3
Query: 417 KTQAVIQANANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGP 596
K++ +I+ ++ RSDPDW ++IF K Q + + K GQT+A A++ FGP
Sbjct: 161 KSRNLIEKHSYRSDPDWPSNYLKIFLKQQVCTKMEKRGVDAKAGQTIACFSHAVLCRFGP 220
>UniRef50_P22168 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Foxtail mosaic
virus
Length = 1335
Score = 42.3 bits (95), Expect = 0.011
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Frame = +3
Query: 324 AYKRH---PNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWRYTAVRIFS 494
AYKR P+ + F P+L+ C + + LS A ++ R PD+ + ++IF
Sbjct: 969 AYKRAMVLPDEPIKFNPELWWACADEVQKTYLSKPIHA-LKNGILRQSPDFDWNKLQIFL 1027
Query: 495 KTQHKSTKAQFSALGKH-GQTLALMHDAIVLIFGPIKXYQR 614
K+Q + + + GQT+A + V++FG + Y R
Sbjct: 1028 KSQWVKKIDKIGKIDVNAGQTIAAFYQPTVMLFGTMARYMR 1068
>UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61;
Trichovirus|Rep: RNA-directed RNA polymerase - Apple
chlorotic leaf spot virus (isolate apple) (ACLSV)
Length = 1885
Score = 41.9 bits (94), Expect = 0.014
Identities = 30/94 (31%), Positives = 44/94 (46%)
Frame = +3
Query: 315 LCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWRYTAVRIFS 494
L + + RH K L +C E +LS K+ A I A++ RSD DW + +F
Sbjct: 1503 LAKVFLRHVPIKCGRDQRLLDQCRQEFEETKLS-KSAATIGAHSQRSDSDWPLDKIFLFM 1561
Query: 495 KTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGP 596
K+Q + + K GQTLA I++ F P
Sbjct: 1562 KSQLCTKFEKRFTEAKAGQTLACFPHKILVEFSP 1595
>UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotiorum
debilitation-associated RNA virus|Rep: Polyprotein -
Sclerotinia sclerotiorum debilitation-associated RNA
virus
Length = 1700
Score = 41.5 bits (93), Expect = 0.019
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
Frame = +3
Query: 285 EVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPD 464
+ LG L+++ Y V DL V C LS KT+A+++ R PD
Sbjct: 1227 KALGNILWTNFKEQYYSGLE-SVMVDQDLLVSCRAEITKTYLS-KTEALLKGGQLRQSPD 1284
Query: 465 WRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXY-QRVFDSXDRAP 641
+ + F KTQ ++ K GQT+ V+ G + Y +R+FD P
Sbjct: 1285 FDKFKIADFLKTQWVRKTEKYGLPIKAGQTVTSFMQETVMATGTLSRYMRRMFDKLCTNP 1344
Query: 642 NLXVYGGQTPYD 677
N+ ++ +T D
Sbjct: 1345 NVYLHREKTEQD 1356
>UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep: RNA
polymerase - Apple stem pitting virus
Length = 2185
Score = 40.7 bits (91), Expect = 0.033
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 2/126 (1%)
Frame = +3
Query: 294 GTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWRY 473
G FL + + + H + E ++ E +LS K+ A I+ ++ RS DW
Sbjct: 1829 GKFLLDTFLKRVPLNSRHN----ESMMSEAVHAFEEKKLS-KSMATIENHSGRSCEDWPI 1883
Query: 474 TAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXY--QRVFDSXDRAPNL 647
IF K+Q + K GQTLA A++ F P Y +VF+ + NL
Sbjct: 1884 DKALIFMKSQLCTKFDNRFRSAKAGQTLACFQHAVLCRFAPYMRYIEAKVFEVLPK--NL 1941
Query: 648 XVYGGQ 665
++ G+
Sbjct: 1942 YIHSGK 1947
>UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein)
(ORF1 polyprotein) [Contains: Putative RNA-directed RNA
polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-); Coat
protein]; n=18; Apple stem grooving virus|Rep: Genome
polyprotein (241 kDa polyprotein) (ORF1 polyprotein)
[Contains: Putative RNA-directed RNA polymerase/helicase
(EC 2.7.7.48) (EC 3.6.1.-); Coat protein] - Apple stem
grooving virus (strain Korea) (ASGV)
Length = 2105
Score = 40.7 bits (91), Expect = 0.033
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +3
Query: 417 KTQAVIQANANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGP 596
K++ + ++ RSD DW+ V +F K+Q+ + + + K GQTLA ++ FGP
Sbjct: 1258 KSEKMWANHSERSDIDWKLDHVFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGP 1317
Query: 597 I 599
+
Sbjct: 1318 M 1318
>UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic virus|Rep:
Replicase - White ash mosaic virus
Length = 954
Score = 40.3 bits (90), Expect = 0.043
Identities = 30/108 (27%), Positives = 47/108 (43%)
Frame = +3
Query: 291 LGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWR 470
+G LF + Y P PF +++ E L KT A + A R DPD+
Sbjct: 772 IGDLLFEAYAD-YMNVPTEASPFLEQEWLDARQEAEKKYLE-KTLAQLTNGAPRQDPDFP 829
Query: 471 YTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXYQR 614
+ +F+K+Q + A K GQT++ +VL+F + Y R
Sbjct: 830 DNFIALFNKSQWVKKLDKVGAKFKAGQTISSFKQEVVLLFITMALYLR 877
>UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic
virus|Rep: RNA replicase - Cymbidium mosaic virus
Length = 1417
Score = 39.9 bits (89), Expect = 0.057
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Frame = +3
Query: 294 GTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWRY 473
G LF + +A P+ VPF+P L+ C + L+ +I +S PD+
Sbjct: 1026 GDVLFVNY-KAIMNLPHEPVPFEPRLWNICKAEVQNTYLAKPIANLINGTLRQS-PDFPA 1083
Query: 474 TAVRIFSKTQHKSTKAQFSALG-KHGQTLALMHDAIVLIFGPIKXYQRVFDSXDRAPNLX 650
+ +F K+Q + A+ K GQT+A V+++G + Y R + ++
Sbjct: 1084 NKIALFLKSQWVKKIEKIGAIPVKPGQTIASFMQETVMLYGTMARYLRKMRQRYQPAHIF 1143
Query: 651 VYGGQTPYD 677
+ +TP D
Sbjct: 1144 INCEKTPED 1152
>UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: RNA
polymerase - Sugarcane striate mosaic associated virus
Length = 1937
Score = 39.1 bits (87), Expect = 0.099
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Frame = +3
Query: 348 KVPFQPD----LFVECINLNEYXQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKST 515
+VP + D LF+EC+ ++ + ++K A I + RS W IF K+Q +
Sbjct: 1592 RVPIKNDRNDHLFLECL-MDFEEKKTSKDSATIANHCIRSQNSWPIDIADIFMKSQLCTK 1650
Query: 516 KAQFSALGKHGQTLALMHDAIVLIFGPIKXY 608
K GQTLA H ++ F P Y
Sbjct: 1651 MESMFCEAKAGQTLACFHHVVLARFSPWVRY 1681
>UniRef50_P17965 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=10;
Carlavirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus M
(strain Russian) (PVM)
Length = 1968
Score = 38.3 bits (85), Expect = 0.17
Identities = 30/105 (28%), Positives = 45/105 (42%)
Frame = +3
Query: 294 GTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWRY 473
G L S + PNH V F + N E +LS K+ A I+ ++ RS DW
Sbjct: 1615 GKALLSEFLKRVPLKPNHNVRFMEEALW---NFEE-KKLS-KSAATIENHSGRSCRDWPT 1669
Query: 474 TAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXY 608
+IFSK+Q + + K Q++ A++ F P Y
Sbjct: 1670 DVAQIFSKSQLCTKFDNRFRVAKAAQSIVCFQHAVLCRFAPYMRY 1714
>UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19;
Flexiviridae|Rep: RNA-dependent RNA polymerase -
Hippeastrum latent virus
Length = 1971
Score = 36.7 bits (81), Expect = 0.53
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +3
Query: 399 YXQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAI 578
+ + ++K+ A I+ ++ RS DW +IFSK+QH + + K Q++ +
Sbjct: 1648 FDKKTSKSAATIENHSGRSCRDWLIDTAQIFSKSQHCTKFDNRFRVAKAAQSIVCFQHEV 1707
Query: 579 VLIFGPIKXY 608
+ F P Y
Sbjct: 1708 LCRFAPYMRY 1717
>UniRef50_A2SZW6 Cluster: Polyprotein; n=1; Blackberry virus X|Rep:
Polyprotein - Blackberry virus X
Length = 244
Score = 35.9 bits (79), Expect = 0.93
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +3
Query: 384 INLNEYXQ-LSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ--HKSTKAQFSALGKHGQT 554
+++NE+ + K +A + N+ RSDPDW+ + +F K Q K K A+ GQT
Sbjct: 170 VSMNEFKENFFKKDEATMVRNSARSDPDWKKNEIFLFMKQQLCKKIEKRYSEAIA--GQT 227
Query: 555 LALMHDAIVLIFGPI 599
++ ++ F +
Sbjct: 228 ISCFQHEVLWRFSAL 242
>UniRef50_A2SXZ3 Cluster: Replicase; n=2; Lolium latent virus|Rep:
Replicase - Lolium latent virus
Length = 440
Score = 35.9 bits (79), Expect = 0.93
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +3
Query: 339 PNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKSTK 518
P+ VPF DL+ E +K++ I+ NR DPDW+ + ++ K Q +
Sbjct: 369 PDEPVPFIRDLW-EQSEAEVLSTYLSKSEMAIKNGKNRQDPDWQDERMFVYLKAQWVTKA 427
Query: 519 AQFS-ALGKHGQT 554
++F+ K GQT
Sbjct: 428 SKFNLPTAKAGQT 440
>UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep:
Replicase - Poplar mosaic virus
Length = 1992
Score = 34.7 bits (76), Expect = 2.1
Identities = 23/99 (23%), Positives = 44/99 (44%)
Frame = +3
Query: 372 FVECINLNEYXQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQ 551
F+E N + + ++K+ A I+ +A RS DW +F K+Q + K Q
Sbjct: 1661 FMERANRDFELKKTSKSAATIENHAQRSCRDWLADVGLVFMKSQLCTKWDNRFRNAKAAQ 1720
Query: 552 TLALMHDAIVLIFGPIKXYQRVFDSXDRAPNLXVYGGQT 668
++ A++ F P Y + + PN ++ G++
Sbjct: 1721 SIVCFQHAVLCRFAPYMRYIEMKLNEVLPPNFYIHSGKS 1759
>UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
common latent virus|Rep: RNA-dependent RNA polymerase -
Narcissus common latent virus
Length = 1966
Score = 34.3 bits (75), Expect = 2.8
Identities = 26/105 (24%), Positives = 42/105 (40%)
Frame = +3
Query: 294 GTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANRSDPDWRY 473
G L + PNH F + N E + +K+ A I+ ++ RS DW
Sbjct: 1613 GRALLKEFLKRVPLKPNHNKRFMDEALW---NFEE--KKVSKSAATIENHSGRSCRDWPI 1667
Query: 474 TAVRIFSKTQHKSTKAQFSALGKHGQTLALMHDAIVLIFGPIKXY 608
+IFSK+Q + + K Q++ A++ F P Y
Sbjct: 1668 EVAQIFSKSQLCTKFDNRFRVAKAAQSIVCFQHAVLCRFAPYMRY 1712
>UniRef50_A5FIA4 Cluster: Beta-N-acetylhexosaminidase precursor;
n=1; Flavobacterium johnsoniae UW101|Rep:
Beta-N-acetylhexosaminidase precursor - Flavobacterium
johnsoniae UW101
Length = 772
Score = 34.3 bits (75), Expect = 2.8
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Frame = +1
Query: 25 YPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKY- 201
Y G +Y A L+ D + K E N+FP D+ Y G + + A K+ S
Sbjct: 534 YQGLNYAKSAYLVTASSTADLANKQVKVELKNEFPNPDIRYVLGDKNIDHHAVKYTSPIE 593
Query: 202 --DPTLLSASIAKRLRFRPSSFLTDFLLLTKSLAHFCFHLYVEPIN 333
+ T+L AS+ + + +F TD ++ K++AH Y+ P N
Sbjct: 594 FKETTVLKASLFQDEKPVGKTF-TDTIIFHKAVAHKV--KYLTPFN 636
>UniRef50_A2EI77 Cluster: Putative uncharacterized protein; n=3;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1314
Score = 33.5 bits (73), Expect = 4.9
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +1
Query: 256 SFLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFSPTFSLNVSISMSTHSFPTRLKLSS 435
SF+TD L S+ FCF Y+ +ND II+ P + +++ M+ + L +SS
Sbjct: 89 SFMTDSLFTNTSMLVFCFIFYL--VNDFVIIRAFNKPEIAKSLNYIMTPNFHSVFLPISS 146
>UniRef50_A6RJ24 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 436
Score = 33.5 bits (73), Expect = 4.9
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +3
Query: 303 LFSSLCRAYKRHPNHKVPFQPDLFVE--CINL-NEYXQLSNKTQAVIQANANRSDPDWRY 473
+FSS Y + VP + + V C L N Y + +A++ AN SDPDW
Sbjct: 211 VFSSSATVYGTVADTGVPLREEYVVGSGCSGLTNPYGRTKWMCEAILSDLAN-SDPDWEI 269
Query: 474 TAVRIFS 494
TA+R F+
Sbjct: 270 TALRYFN 276
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 761,640,857
Number of Sequences: 1657284
Number of extensions: 17136950
Number of successful extensions: 46873
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 44887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46833
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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