Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060496.seq
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    30   0.27 
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.83 
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   2.5  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   2.5  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    27   3.4  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    26   4.4  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   4.4  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    26   5.9  
SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   5.9  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   7.8  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    25   7.8  

>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 328 INDIPIIKFLFSPTFSLNVSISMSTHSFPTRLKL 429
           IND+ ++K L  P F+LNV     T S  + +K+
Sbjct: 124 INDVEVVKVLLEPDFNLNVDAICETLSKDSAIKV 157


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 4/140 (2%)
 Frame = +1

Query: 40  YKTVAALMMEPRDPDSLEIRHKGEFSNQF--PWVDLPYENGAQTLSVIAPKHDSKYDPTL 213
           ++ VA+ + E   P  LEIR + EFS  F  P     + + A + +++ P        T 
Sbjct: 161 FQRVASALYEESSPLELEIRSESEFSKMFFEPKKSSSFVSRAASPAMVGPGVPFYSSITG 220

Query: 214 LSASIAKRLRFRPSSFLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFSPTFSLNVSIS 393
            + ++        +   +D +  +   +    +   +P N++PI   L S  F  +  +S
Sbjct: 221 ANGNVLAPSGSLKAVENSDVIESSAEDSSNTDNPSTKPSNEMPISPLLSSSVFFKDTEMS 280

Query: 394 M--STHSFPTRLKLSSKRTQ 447
              S HS  +R   S KRT+
Sbjct: 281 TPNSNHS-RSRTPSSKKRTR 299


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 456 DPDWRYTAVRIFSKTQHKSTKAQFSALGKHGQTLALMH 569
           DP   ++A +IFSK +H  T+ + S + +  + L L++
Sbjct: 602 DPQSSFSAEKIFSKLKHLLTRTRDSYISEDTKILRLLN 639


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 292 LAHFCFHLYVEPINDIPIIKFLFSPTFSLNVSISMSTHSFPTRLKLSSKR 441
           L  F +   +E +  +  I FL+ P    N  +++ +HS  + LKL+  R
Sbjct: 783 LTLFAYKFPLEVVAHLYDILFLYGPGILFNFGLALLSHSQESLLKLNMDR 832


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 403 HSFPTRLKLSSKRTQIVRIP 462
           H  P R++LSS+  QI RIP
Sbjct: 5   HGTPQRIQLSSRAIQICRIP 24


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 477 AVRIFSKTQHKSTKAQFSALGKHGQTL 557
           A RIFSKT++  + A    LGKH + L
Sbjct: 321 AKRIFSKTRNAISTAFTDMLGKHAKDL 347


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 68  NPGTPTPLKSATRGSSPINF 127
           +PGTPT LKS +   SP +F
Sbjct: 344 DPGTPTSLKSPSLRKSPSSF 363


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 46  TVAALMMEPRDPDSLEIRHKGEFSNQFPWVDL 141
           T+A L++EPRD   L +  KG    Q PW  +
Sbjct: 264 TIATLVLEPRD---LIVYRKGFALLQIPWTSV 292


>SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 189 MFGCYNAEGLGAILIREI 136
           +FGC++A GLG  L  EI
Sbjct: 64  LFGCWSANGLGIALAYEI 81


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 151 NGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSSFLTDFLLLTKSLAH 300
           NG+   + +A   + +    LLS+ I   +RF    +  +FL L  S+AH
Sbjct: 210 NGSSCCAYVASIANRRLVLCLLSSLINTAMRFNTMFWKPEFLPLDNSVAH 259


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 267 RLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLF 374
           RL   D  +     S +C   +R P + + F PDLF
Sbjct: 180 RLDDPDTSVVNAAVSVICELARRAPKNYLEFAPDLF 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,937
Number of Sequences: 5004
Number of extensions: 69540
Number of successful extensions: 189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)