Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060496.seq
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0874 + 12017069-12018051,12018137-12018316,12018421-120186...    31   0.65 
07_03_0138 - 14140653-14140988                                         30   2.0  
01_03_0116 - 12665212-12665241,12665555-12666307                       29   3.5  
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381...    28   6.0  
03_04_0051 + 16852980-16852991,16853952-16854033,16854108-16854763     28   6.0  
05_06_0216 - 26453029-26454597                                         28   8.0  
04_04_0577 + 26349205-26349669,26350384-26350482,26350887-263510...    28   8.0  
03_02_0875 + 12038365-12039329,12039417-12039593,12039651-120398...    28   8.0  

>03_02_0874 +
           12017069-12018051,12018137-12018316,12018421-12018600,
           12018718-12018797,12018999-12019259,12019360-12019474,
           12019631-12019855,12020840-12020849
          Length = 677

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 119 INFHGSISLMRMAPKPSAL*HPNMTRNMTRLCFRPPLPKDSVSDP 253
           I  HG   ++R+A  P AL H  M +    L   PP P  S S P
Sbjct: 31  IQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPPPPSSSSP 75


>07_03_0138 - 14140653-14140988
          Length = 111

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -1

Query: 232 WQWRPKAKSGHISSHVWVL*R*GFGRHSHKGDRPMEIDWRTPPCGGFQGSRGPG 71
           W+WR  A    +S+   V  + G G+   +G+R     WR    GG +G  G G
Sbjct: 21  WRWRWMAAVERVSAAAVV--QAGVGKVGREGERQRGRQWRGRGSGGEEGVEGGG 72


>01_03_0116 - 12665212-12665241,12665555-12666307
          Length = 260

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -2

Query: 345 DWDVVYRLDIEMKTEMCQGLRQKEKVCKEGRGSETESFGNGGRKQSRV 202
           D +V+ RLD+E   E+  G  +KE+ C +G G      G  GR  SR+
Sbjct: 202 DGEVLRRLDME---EVIGG-GEKEETCGDGDGRVVVGIGGRGRSFSRI 245


>11_04_0340 -
           16536571-16536705,16536820-16536951,16537265-16538106,
           16538480-16538940,16539032-16540314,16540423-16541627,
           16541857-16542157
          Length = 1452

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 404 TAFQQDSSCHPSERKSFGS--RLAVHCCPHIFK 496
           T FQ  SS    ++  F S  +L + CCPHI K
Sbjct: 899 TPFQSFSSFRTEQKSWFPSLNKLTIGCCPHISK 931


>03_04_0051 + 16852980-16852991,16853952-16854033,16854108-16854763
          Length = 249

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = -1

Query: 118 WRTPPCGGFQGSRGPGVPSL--ELPQFCS 38
           W  PP GG+ G R P  P    E P  CS
Sbjct: 219 WAPPPAGGYYGGRSPYQPPYYDEEPAGCS 247


>05_06_0216 - 26453029-26454597
          Length = 522

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
 Frame = -2

Query: 345 DWDVVYRLDIEMKTEMCQGLRQKEKVCKEGRGSETESF--GNGGRKQSRVIFRV---MFG 181
           +W + YR  I     +   +R+ E+          ESF   + GR   R + R+    FG
Sbjct: 86  NW-IAYRHAIP--NSLMPAIRRHERRAARALVRSVESFIDADDGRPSRRKVSRLRLEFFG 142

Query: 180 CYNAEGLGAILIREIDPW 127
            +N  G+  ++ + ID W
Sbjct: 143 THNTAGINRLISKAIDDW 160


>04_04_0577 +
           26349205-26349669,26350384-26350482,26350887-26351064,
           26351900-26352087,26352335-26352373
          Length = 322

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 300 FLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNKTQAVIQANANR 452
           F    + R Y R+  ++ PF PD+ V+ I+L +   L +   A I    +R
Sbjct: 191 FDMDDVVRKYIRYTLNEKPFNPDVVVDLIHLRKASMLEDAEVAEILNEISR 241


>03_02_0875 +
           12038365-12039329,12039417-12039593,12039651-12039893,
           12040045-12040124,12040242-12040508,12040599-12040710,
           12040757-12041071,12041357-12041366
          Length = 722

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 119 INFHGSISLMRMAPKPSAL*HPNMTRNMTRLCFRPPLPKDSVSDPLPS 262
           I  HG   ++R+A  P AL H  M +    L   PP    S S  +P+
Sbjct: 31  IQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPQAASSSPTVPA 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,140,853
Number of Sequences: 37544
Number of extensions: 501682
Number of successful extensions: 1430
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)