Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060496.seq
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_27781| Best HMM Match : Ank (HMM E-Value=0)                         28   6.2  
SB_15184| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_9006| Best HMM Match : WSC (HMM E-Value=0.85)                       28   6.2  
SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69)               28   6.2  
SB_54930| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=0.4)            28   8.1  

>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = +3

Query: 225  HCQKTPFPTLF------LPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVP 356
            HCQ T FPT+F      L ++LS S   L  +  S+ C    RH    VP
Sbjct: 927  HCQCTVFPTVFIVIVSVLCFQLSSSSSSLSVYCVSN-CLPRHRHCQDAVP 975


>SB_27781| Best HMM Match : Ank (HMM E-Value=0)
          Length = 485

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 331 NDIPIIKFLFSPTFSLNVSISMSTHSFPTRLKLSSKRTQIVR 456
           ND+  + FL   +  +N  I  STH  P  L +S+    +VR
Sbjct: 200 NDVETVLFLIGVSVDINSRIQDSTHRTPLHLAVSAGAEIMVR 241


>SB_15184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 193 SKYDPTLLSASIAKRLRFRPSSFLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFSPTF 372
           SK  P      I     FRP S L+ F  + + L +     YVE  N +   +F F   +
Sbjct: 89  SKITPVDKGGEITDPFNFRPISTLSTFTQVLEKLVYQQIINYVEKQNILYECQFQFRKGY 148

Query: 373 SLNVSIS 393
           S +++I+
Sbjct: 149 STSLAIT 155


>SB_9006| Best HMM Match : WSC (HMM E-Value=0.85)
          Length = 441

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = +1

Query: 262 LTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFSPTFSLNVSISMSTHSFPTRLKLSSKR 441
           +T F+++  SL++   H +   +  I       SP+ S + S  +S+  FP RL  SS  
Sbjct: 211 ITVFVIVIASLSYHHHHHHTVIVIVIASSSSSPSPSSSSSSSSPLSSSLFPARLSTSSIN 270

Query: 442 T----QIVRIPTGGTLLSAYFQKLSINQR 516
           T    Q  R+ T  +  +A   K  I ++
Sbjct: 271 TRSLSQSYRVITSSSYENADLSKAKIRRK 299


>SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69)
          Length = 250

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 193 SKYDPTLLSASIAKRLRFRPSSFLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFSPTF 372
           SK  P      I     FRP S L+ F  + + L +     YVE  N +   +F F   +
Sbjct: 131 SKITPVDKGGEITDPFNFRPISTLSTFTQVLEKLVYQQIINYVEKQNILYECQFQFRKGY 190

Query: 373 SLNVSIS 393
           S +++I+
Sbjct: 191 STSLAIT 197


>SB_54930| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=0.4)
          Length = 365

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 92  KSATRGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLCFRPPLPK 235
           KS  +  S +   GS+ L   + K S+   PN ++N+ +  + PP+PK
Sbjct: 288 KSVKQSESLLKRTGSVPLQ--SRKTSSGERPNWSQNLKKASYVPPMPK 333


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,611,088
Number of Sequences: 59808
Number of extensions: 549874
Number of successful extensions: 1485
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)