Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060496.seq
         (688 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF090139-1|AAC35985.1|  105|Homo sapiens immunoglobulin heavy ch...    32   2.2  
BC018706-1|AAH18706.1|  480|Homo sapiens TNS4 protein protein.         31   3.8  
AF090138-1|AAC35984.1|  105|Homo sapiens immunoglobulin heavy ch...    31   3.8  
AK027856-1|BAB55413.1|  480|Homo sapiens protein ( Homo sapiens ...    30   8.9  
AF417488-1|AAN32666.1|  715|Homo sapiens C-terminal tensin-like ...    30   8.9  

>AF090139-1|AAC35985.1|  105|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 105

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 61  MMEPRDPDSLE-IRHKGEFSNQF-PWVDLPYENGAQTLSVIAPKHDSKYDPTLLS 219
           +++P +  SL  + H G FSN F  W+  P   G + +  I P   + Y+P+L S
Sbjct: 11  LLKPSETLSLTCVVHGGSFSNYFWSWIRQPPGKGLEWIGEINPSGRTDYNPSLKS 65


>BC018706-1|AAH18706.1|  480|Homo sapiens TNS4 protein protein.
          Length = 480

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +2

Query: 89  LKSATRGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLCFRPPLPKDSVSDPLPSL 265
           L+S    SS ++  GS+SL        A  +P +T    R    PPL K+  S   PS+
Sbjct: 72  LESPANSSSSLHSLGSVSLCTRPSDFQAPRNPTLTMGQPRTPHSPPLAKEHASSCPPSI 130


>AF090138-1|AAC35984.1|  105|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 105

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +1

Query: 58  LMMEPRDPDSLE-IRHKGEFSNQF-PWVDLPYENGAQTLSVIAPKHDSKYDPTLLS 219
           ++ +P +  SL  + H G FSN F  W+  P   G + +  I P   + Y+P+L S
Sbjct: 10  VLAKPSETLSLTCVVHGGSFSNYFWSWIRQPPGKGLEWIGEINPSGRTDYNPSLKS 65


>AK027856-1|BAB55413.1|  480|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14950 fis, clone PLACE2000371, weakly similar to
           TENSIN. ).
          Length = 480

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +2

Query: 89  LKSATRGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLCFRPPLPKDSVSDPLPSL 265
           L+S    SS ++  GS+SL        A  +P +T    R    PPL K+  S   PS+
Sbjct: 72  LESPANSSSSLHSLGSVSLCTRPSDFQAPRNPTLTMGQPRTPHSPPLAKEHASICPPSI 130


>AF417488-1|AAN32666.1|  715|Homo sapiens C-terminal tensin-like
           protein protein.
          Length = 715

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +2

Query: 89  LKSATRGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLCFRPPLPKDSVSDPLPSL 265
           L+S    SS ++  GS+SL        A  +P +T    R    PPL K+  S   PS+
Sbjct: 307 LESPANSSSSLHSLGSVSLCTRPSDFQAPRNPTLTMGQPRTPHSPPLAKEHASICPPSI 365


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,668,018
Number of Sequences: 237096
Number of extensions: 2653866
Number of successful extensions: 7195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7195
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)