Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060496.seq
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276028-1|CAC81655.1|  816|Caenorhabditis elegans TRP homlogous...    28   5.4  
AF040654-5|AAN65302.2|  816|Caenorhabditis elegans Trp (transien...    28   5.4  
AF040654-4|AAN65303.2|  886|Caenorhabditis elegans Trp (transien...    28   5.4  
AF039042-8|AAC48243.1|  337|Caenorhabditis elegans Serpentine re...    28   7.2  
Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL132863-4|CAB60575.1|  410|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AJ276028-1|CAC81655.1|  816|Caenorhabditis elegans TRP homlogous
           cation channel proteinprotein.
          Length = 816

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
 Frame = +1

Query: 193 SKYDPTLLSASIA---KRLRFRPSSFLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFS 363
           S  DP L +  ++   KRL F  + F TD+  L++    FC H+ ++ +     ++ + +
Sbjct: 213 SARDPILYAFELSWELKRLSFIENEFRTDYEELSQKCQKFCVHM-LDQVRGSKELEVVLN 271

Query: 364 PTFSLNVSISMSTHSFP---TRLKLSSKRTQ 447
            T +    ++ + +  P    RLKL+ + +Q
Sbjct: 272 HTTNAWHDVTSANYGNPEKLARLKLAIQLSQ 302


>AF040654-5|AAN65302.2|  816|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 2, isoform a
           protein.
          Length = 816

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
 Frame = +1

Query: 193 SKYDPTLLSASIA---KRLRFRPSSFLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFS 363
           S  DP L +  ++   KRL F  + F TD+  L++    FC H+ ++ +     ++ + +
Sbjct: 213 SARDPILYAFELSWELKRLSFIENEFRTDYEELSQKCQKFCVHM-LDQVRGSKELEVVLN 271

Query: 364 PTFSLNVSISMSTHSFP---TRLKLSSKRTQ 447
            T +    ++ + +  P    RLKL+ + +Q
Sbjct: 272 HTTNAWHDVTSANYGNPEKLARLKLAIQLSQ 302


>AF040654-4|AAN65303.2|  886|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 2, isoform b
           protein.
          Length = 886

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
 Frame = +1

Query: 193 SKYDPTLLSASIA---KRLRFRPSSFLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFS 363
           S  DP L +  ++   KRL F  + F TD+  L++    FC H+ ++ +     ++ + +
Sbjct: 213 SARDPILYAFELSWELKRLSFIENEFRTDYEELSQKCQKFCVHM-LDQVRGSKELEVVLN 271

Query: 364 PTFSLNVSISMSTHSFP---TRLKLSSKRTQ 447
            T +    ++ + +  P    RLKL+ + +Q
Sbjct: 272 HTTNAWHDVTSANYGNPEKLARLKLAIQLSQ 302


>AF039042-8|AAC48243.1|  337|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 25 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 253 SSFLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFSPTFSLNVSISMSTHS-FPTR 420
           SSF T F+ + ++LA +  H Y    + + I+   F    SL +++ +   S F TR
Sbjct: 117 SSFTTVFMAIERTLATYLSHKYEHKNSCVGILLVCFQIIISLLITVPLFLDSKFTTR 173


>Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical
           protein ZK1098.1 protein.
          Length = 724

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 290 DFVRRRKSVRKEEGRKRSLLA 228
           DFV RR   +KEE RKR + A
Sbjct: 348 DFVARRDKEKKEEDRKRDIAA 368


>AL132863-4|CAB60575.1|  410|Caenorhabditis elegans Hypothetical
           protein Y37H2A.6 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 277 LLTKSLAHFCFHLYVEPIN-DIPIIKFLFSPTFS 375
           +L +S+   CFH YVE    D+  I  LF P++S
Sbjct: 323 VLLQSVNFQCFHFYVEKAGFDVVEIVRLFDPSYS 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,228,265
Number of Sequences: 27780
Number of extensions: 399333
Number of successful extensions: 1073
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)