Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060496.seq
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    27   0.22 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.51 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.51 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.51 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.3  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 4   HQAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVD--LPYENGAQ 162
           HQ +     G     V+ L++    PD   ++++ EF  Q  W D  L Y N +Q
Sbjct: 126 HQHLRTHLRGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQ 180


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 49  VAALMMEPRDPDSLEIRHKGEFSNQFPWVD--LPYENGAQ 162
           V+ L++    PD   ++++ EF  Q  W D  L Y N +Q
Sbjct: 90  VSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQ 129


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 49  VAALMMEPRDPDSLEIRHKGEFSNQFPWVD--LPYENGAQ 162
           V+ L++    PD   ++++ EF  Q  W D  L Y N +Q
Sbjct: 90  VSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQ 129


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 49  VAALMMEPRDPDSLEIRHKGEFSNQFPWVD--LPYENGAQ 162
           V+ L++    PD   ++++ EF  Q  W D  L Y N +Q
Sbjct: 90  VSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQ 129


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 216 KQSRVIFRVMFGCYN 172
           K SR++F V F C+N
Sbjct: 406 KYSRIVFPVCFVCFN 420


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 216 KQSRVIFRVMFGCYN 172
           K SR++F V F C+N
Sbjct: 406 KYSRIVFPVCFVCFN 420


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 216 KQSRVIFRVMFGCYN 172
           K SR++F V F C+N
Sbjct: 344 KYSRIVFPVCFVCFN 358


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 522 EPSLIYAEFLKICGQQCTASRDP 454
           +P   Y E   + G   TA RDP
Sbjct: 377 DPDHRYLESFGVMGDSATAMRDP 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,868
Number of Sequences: 438
Number of extensions: 5252
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)