Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060496.seq
(688 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2) 30 1.7
At4g03490.1 68417.m00476 ankyrin repeat family protein contains ... 29 2.2
At1g51190.1 68414.m05758 ovule development protein, putative sim... 29 3.8
At5g01940.1 68418.m00113 eukaryotic translation initiation facto... 28 6.7
At4g27010.1 68417.m03885 expressed protein ; expression support... 28 6.7
At1g71760.1 68414.m08294 hypothetical protein 28 6.7
At2g36470.1 68415.m04476 expressed protein 27 8.8
At2g20625.1 68415.m02416 hypothetical protein 27 8.8
At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative (CH... 27 8.8
At1g31630.1 68414.m03884 MADS-box family protein similar to MADS... 27 8.8
>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
Length = 638
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 35 ATTKLWQL**WNPGTPTPLKSATRGSSPINFHGSISLMRMAPKPS--AL*HPNMTRNMT 205
AT QL NP P S + +SP + H S +L + P PS H N T +M+
Sbjct: 134 ATAAAMQLFLMNPPPPQQPPSPSSTTSPRSHHNSSTLHMLLPSPSTNTTHHQNYTNHMS 192
>At4g03490.1 68417.m00476 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 587
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 585 LRQWHHASRLMSGHAFQGPK 526
L+ W+H S + SGH + GPK
Sbjct: 562 LKLWNHYSLVFSGHLYDGPK 581
>At1g51190.1 68414.m05758 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099) [Arabidopsis thaliana]
Length = 568
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 117 GELPLVADFKGVGVPGFHH 61
GE+P VADF GV G HH
Sbjct: 61 GEVPKVADFLGVSKSGDHH 79
>At5g01940.1 68418.m00113 eukaryotic translation initiation factor
2B family protein / eIF-2B family protein similar to
SP|P41035 Eukaryotic translation initiation factor 2
subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
Pfam profile PF01873: Domain found in IF2B/IF5
Length = 231
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +3
Query: 249 TLFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYXQLSNK 419
T+ +P +L + F+ LCR R P+H + F ++LN+ +L K
Sbjct: 100 TVMMPPQLLAEGTITVCLNFADLCRTMHRKPDHVMKFLLAQMETKVSLNKQQRLEIK 156
>At4g27010.1 68417.m03885 expressed protein ; expression supported by
MPSS
Length = 2535
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 307 FHLYVEPINDIPIIKFLF 360
F+LY +PIN++P+ F F
Sbjct: 1927 FYLYDDPINEVPVFSFNF 1944
>At1g71760.1 68414.m08294 hypothetical protein
Length = 259
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 321 DIEMKTEMCQGLRQKEKVCKEGRGSETESFGNGGRKQSRVIFRVMF 184
D+++ TEM + ++ K+ KE + S G K S IF+ F
Sbjct: 121 DVKIVTEMPSNMFKRPKLNKESNAGGSSSNTGGENKDSNEIFKPSF 166
>At2g36470.1 68415.m04476 expressed protein
Length = 327
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 453 SDPDWRYTAVRIFSKTQHKSTKAQFSALGK 542
S WR + FS T +TKAQFS +G+
Sbjct: 146 SSSSWRVSKTERFSGTCWLTTKAQFSDVGR 175
>At2g20625.1 68415.m02416 hypothetical protein
Length = 190
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -3
Query: 287 FVRRRKSVRKEEGRKRSLLAMEAESKVGSYFESCLGAITLRVWAPF 150
+V++ +++ K+ +L E S V S E+ G +R+W+PF
Sbjct: 6 YVKQTEALEKKNRIVELMLEREHASSVKSVLETLNGLPGVRMWSPF 51
>At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative
(CHX16) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 847
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 364 PTFSLNVSISMSTHSFPTRLKLSSKRTQIVRIPTGGTLL 480
P+ L S S + +PTRLK R V++ TGG LL
Sbjct: 77 PSTGLGQSYSFRFNKYPTRLKYELYRDS-VQLITGGILL 114
>At1g31630.1 68414.m03884 MADS-box family protein similar to
MADS-box protein NMH 7 GI:2827300 from [Medicago sativa]
Length = 339
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 339 PNHKVPFQPDLFVECINLNEYXQL 410
PNH+ PFQ D F+E + Y Q+
Sbjct: 267 PNHQYPFQDDPFMEMLMEYPYEQV 290
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,575,048
Number of Sequences: 28952
Number of extensions: 385282
Number of successful extensions: 1075
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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