Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060495.seq
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    29   0.79 
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.4  

>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 7   RWPPSPETCIVGSPGFTLGVLGPSSTGH 90
           ++P SPE CI    GF+  +L  SS  H
Sbjct: 214 QFPSSPEDCINSLEGFSCAMLNTSSESH 241


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 558 VNCXNCRRHPEDPFIYIYYKLESQLN*GL 472
           V C NC RHP +  +YI  K +     GL
Sbjct: 92  VACCNCCRHPSEACLYILNKRKVMSQHGL 120


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 35  LSDLPDSLSVF*DPPAPVTVLVELVDSDEEFNERTN 142
           L DLP    +F  PP P T   E  D++  F +++N
Sbjct: 757 LDDLPAVPRIFSPPPLPKTPSGEFGDNEFMFPKKSN 792


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,749
Number of Sequences: 5004
Number of extensions: 36609
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)