Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060495.seq
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1367 + 29607008-29607501,29608726-29608906,29609006-296090...    28   5.8  
03_04_0122 + 17465804-17465893,17466028-17466147,17466287-174663...    28   7.6  

>06_03_1367 +
           29607008-29607501,29608726-29608906,29609006-29609065,
           29609486-29609649,29609723-29609888,29609889-29609957,
           29610060-29610155,29610345-29610389,29610765-29610835,
           29610996-29611062,29611150-29611200,29611276-29611686
          Length = 624

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 533 WRRQLXQFTXHTK*YILFSTRYGWXRIRMQ--QRYAXPAVLYNHL 661
           WRR+L   T  +   ILFS  Y W R + +   R   P V+ NH+
Sbjct: 145 WRRRLMWITRISARCILFSFGYHWIRRKGKPAPRELAPIVVSNHV 189


>03_04_0122 +
           17465804-17465893,17466028-17466147,17466287-17466317,
           17466978-17467153,17468051-17468142,17468259-17468340,
           17468498-17468566,17468655-17468759,17471246-17471342,
           17471438-17471676,17472191-17472949,17473079-17473297
          Length = 692

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 373 VNLLVDPFVASDGFREDGDRIYHYF 447
           + ++ DP VASDGF  +G+ I  +F
Sbjct: 620 MEIMKDPQVASDGFTYEGEAIRRWF 644


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,528,484
Number of Sequences: 37544
Number of extensions: 256706
Number of successful extensions: 571
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)