Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060494.seq
         (530 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    26   0.24 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   1.3  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    21   8.9  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 175 EYTFNTNFIRLLKRKWVCLENLFRMHLQWKNWYEEHR 285
           E+TF + +I + KRK    ENL     Q K W++  R
Sbjct: 174 EFTFVSKYITI-KRKSELAENLGLSERQIKIWFQNRR 209


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/13 (69%), Positives = 10/13 (76%), Gaps = 2/13 (15%)
 Frame = -1

Query: 281 CSSY--QFFHCKC 249
           CSS+  QFFHC C
Sbjct: 415 CSSFFQQFFHCYC 427


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 214 RKWVCLENLFRMHLQWKNWYEEH 282
           R W  L   +    Q+K  YEEH
Sbjct: 98  RDWERLSKKYDPQGQYKKRYEEH 120


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,244
Number of Sequences: 336
Number of extensions: 2158
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12887571
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)