Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060494.seq
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    27   1.7  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   9.3  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   9.3  

>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
 Frame = -3

Query: 330 AXGAHDSR---ERNGEDFP 283
           A  AHD+R   ERNGEDFP
Sbjct: 105 AKDAHDARLKAERNGEDFP 123


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 254 KCMRNKFSKHTHFLFNNLMKLVLKVY 177
           K M  K+  ++H+L   +MK V +++
Sbjct: 610 KLMEEKYVHYSHYLIKKIMKYVPEIF 635


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 344 ERSAHSQDIXKNIQYISNXXXQANNGSENNETGPA 448
           E+ +H Q + KN  Y S    Q +   E+N++G A
Sbjct: 659 EQGSHEQLMAKNSVYTSMWHSQESPFGESNKSGDA 693


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,920,725
Number of Sequences: 5004
Number of extensions: 35321
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)