Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060494.seq
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0269 + 1788788-1789508,1789629-1789658,1790127-1790368,179...    29   2.3  
06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139...    29   3.1  
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318...    28   4.1  
04_04_0418 + 25077748-25078101,25079413-25079538,25080683-250815...    28   5.4  
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406...    27   9.4  

>02_01_0269 +
           1788788-1789508,1789629-1789658,1790127-1790368,
           1790595-1790803,1791924-1792182
          Length = 486

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 462 LCIMINWLLARXKHRXKYATLY 527
           L +++ WL AR KH  +YA LY
Sbjct: 109 LVVLLGWLGARQKHLRRYADLY 130


>06_03_1501 +
           30612643-30613310,30613396-30613501,30613732-30613934,
           30614211-30614502
          Length = 422

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 420 DPKTMKLDQXRXRPLCIMINWLLARXKHRXKYATLY 527
           DPK       + + + +++ WL +R KH  +YA  Y
Sbjct: 127 DPKVCGDSHGKSQTVVVLLGWLGSRQKHLKRYADWY 162


>08_02_1186 +
           25027498-25029854,25029953-25030564,25031742-25031847,
           25032669-25033199
          Length = 1201

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 208 LKRKWVCLENLFRMHLQWKNWYE 276
           L+ KW CL+NL  + L++ +W E
Sbjct: 392 LQGKWACLQNLRVIDLRYTDWVE 414


>04_04_0418 +
           25077748-25078101,25079413-25079538,25080683-25081593,
           25081970-25082453
          Length = 624

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -1

Query: 233 SKHTHFLFNNLMKLVLKVYSIVQSLI 156
           ++H+HF+F  +  +VL VY +V +++
Sbjct: 256 AEHSHFMFTQISSVVLGVYLMVATIL 281


>05_03_0582 -
           15738503-15739301,15739385-15739642,15740585-15740670,
           15740879-15740960,15741044-15741213,15742081-15742194,
           15742984-15743082,15743171-15743249,15744604-15744710
          Length = 597

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/60 (26%), Positives = 22/60 (36%)
 Frame = +2

Query: 338 GFERSAHSQDIXKNIQYISNXXXQANNGSENNETGPAKXQASLHNDQLAAGPTEAPLXIR 517
           G +   H Q     + Y S+        SE+         ASL N   +A P   PL +R
Sbjct: 464 GIQLQQHQQPSQSQLPYNSSPYPPPPWASEDTAESNPFIAASLKNQPTSASPVNVPLNLR 523


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,294,079
Number of Sequences: 37544
Number of extensions: 193304
Number of successful extensions: 366
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)