Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060494.seq
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29612-3|AAA68802.2|  289|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AC006641-1|AAF39824.2|  376|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z36282-1|CAD45602.1|  424|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF455271-1|AAL65193.1|  424|Caenorhabditis elegans C21ORF80 prot...    27   8.4  

>U29612-3|AAA68802.2|  289|Caenorhabditis elegans Hypothetical
           protein C09B8.4 protein.
          Length = 289

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 435 KLDQXRXRPLCIMINWLLARXKHRXKYATLY 527
           K +    +P+ +MI W  A  KH  KY+ LY
Sbjct: 47  KANASTSKPVVLMIGWAGAANKHMEKYSKLY 77


>AC006641-1|AAF39824.2|  376|Caenorhabditis elegans Hypothetical
           protein F45D11.10 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 363 RTSRRTFNTSATXXVKLTTDPKTMK 437
           R  RR FN+SA+  +K  T PK +K
Sbjct: 12  RAYRRLFNSSASWKIKHGTSPKLLK 36


>Z36282-1|CAD45602.1|  424|Caenorhabditis elegans Hypothetical
           protein K10G9.3 protein.
          Length = 424

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 7/30 (23%), Positives = 16/30 (53%)
 Frame = +1

Query: 256 QWKNWYEEHRKIFAVSFSAIMRSGSDGRLR 345
           +WK W+  +  +++ +F  +   G  G L+
Sbjct: 169 KWKGWFYSYEDVYSRNFQCVSIQGDSGTLK 198


>AF455271-1|AAL65193.1|  424|Caenorhabditis elegans C21ORF80
           protein.
          Length = 424

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 7/30 (23%), Positives = 16/30 (53%)
 Frame = +1

Query: 256 QWKNWYEEHRKIFAVSFSAIMRSGSDGRLR 345
           +WK W+  +  +++ +F  +   G  G L+
Sbjct: 169 KWKGWFYSYEDVYSRNFQCVSIQGDSGTLK 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,404,386
Number of Sequences: 27780
Number of extensions: 193004
Number of successful extensions: 430
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)