Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060494.seq
         (530 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   0.84 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   1.5  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   4.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   5.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 0.84
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 354 ALRSKPTIAXGAHDSRERNGEDFPVLFIPIFPL*MHAKQIF 232
           A+R+   I  G  D  ++  E+  +LF+PI      AKQI+
Sbjct: 751 AVRTASQIPQGFKDLVQKKCEERGILFMPIPNRYREAKQIY 791


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/13 (69%), Positives = 10/13 (76%), Gaps = 2/13 (15%)
 Frame = -1

Query: 281 CSSY--QFFHCKC 249
           CSS+  QFFHC C
Sbjct: 419 CSSFFQQFFHCYC 431



 Score = 21.4 bits (43), Expect = 5.9
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +3

Query: 426 KTMKLDQXRXRPLCIMINW 482
           K    D+ +  P+C+ I W
Sbjct: 319 KNPNFDRMQGNPICVQIPW 337


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 395 NXXXQANNGSENNETGPAK 451
           N   Q N  +EN++TG AK
Sbjct: 532 NCVIQYNTRAENHQTGTAK 550


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 428 NNETGPAKXQASLHND 475
           NNE GPA  + +L+N+
Sbjct: 353 NNELGPAVKRIALNNN 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,770
Number of Sequences: 438
Number of extensions: 2553
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)