Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060494.seq
         (530 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63770.1 68418.m08004 diacylglycerol kinase, putative similar...    28   4.5  
At1g22310.2 68414.m02792 DNA-binding protein-related contains Pf...    27   6.0  

>At5g63770.1 68418.m08004 diacylglycerol kinase, putative similar to
           diacylglycerol kinase, theta (diglyceride kinase, DGK-
           theta, DAG kinase theta). [Homo sapiens]
           SWISS-PROT:P52824
          Length = 712

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = -1

Query: 389 CIECSSXCPGNERYARSLPSLPERMIAENETAKIFRCSSYQFFHCKCMRNKFSKH 225
           C+   S  PG     ++  S+P    A    A  F CSS     CKC+    S H
Sbjct: 89  CVCLYSLVPGQNVSNKASLSIPVHRCAVCGVAAHFYCSSSAAKDCKCVAQAGSDH 143


>At1g22310.2 68414.m02792 DNA-binding protein-related contains Pfam
           profiles PF02178: AT hook motif, PF01429: Methyl-CpG
           binding domain
          Length = 524

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 362 GNERYARSLPSLPERMIAENETAKIFRCSS 273
           GN   A SLP +  R+++++E   + +CSS
Sbjct: 18  GNRLSAESLPLIDTRLLSQSELRALSQCSS 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,573,055
Number of Sequences: 28952
Number of extensions: 169901
Number of successful extensions: 379
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)